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sr320 / ceabigr

Workshop on genomic data integration with a emphasis on epigenetic data (FHL 2022)
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clean up repo for publication #113

Open sr320 opened 2 months ago

yaaminiv commented 2 months ago

place files to be deleted in the trash so we can review before deleting: https://github.com/sr320/ceabigr/tree/main/trash

kubu4 commented 2 months ago

I don't think they need to be deleted, do they? I mean, I guess we could recover them by rolling back to earlier commits if needed, but we might want to reference/access various scripts for other projects/uses without having to perform that step.

sr320 commented 2 months ago

big goal now is making repo understandable by someone reading the paper.

yaaminiv commented 2 months ago

i think the place to start are the code and output READMEs.

i moved miscellaneous code and output directories to the misc directory (formerly trash) and updated the code README with all scripts i used for the analysis and output README with the output directories related to information discussed in the paper.

@sr320 @kubu4 @AHuffmyer can y'all do the same?

once we nail down the READMEs, we can move all other files to the misc directory then decide what to do with them.

yaaminiv commented 2 months ago

(and if i mistakenly moved something we needed into the misc directory...sorry!)

sr320 commented 2 months ago

reminder "real" code is already noted with "00" https://github.com/sr320/ceabigr/tree/main/code

yaaminiv commented 2 months ago

reminder "real" code is already noted with "00" https://github.com/sr320/ceabigr/tree/main/code

welp, some of mine that i used for the manuscript was not noted with a "00"!