% methylation matrix of intersecting loci ? - Githubissues

sr320 / ceabigr

Workshop on genomic data integration with a emphasis on epigenetic data (FHL 2022)

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% methylation matrix of intersecting loci ? #31

Closed sr320 closed 2 years ago

sr320 commented 2 years ago

hu Laura yes - @yaaminiv will post soon

yaaminiv commented 2 years ago

@laurahspencer @ksil91

union bedgraph: https://gannet.fish.washington.edu/seashell/ceabigr/output/methylation-landscape/union_10x.bedgraph

union bedgraph with a column for avg meth across samples: https://gannet.fish.washington.edu/seashell/ceabigr/output/methylation-landscape/union-averages.bedgraph

code: https://github.com/sr320/ceabigr/blob/main/code/General-Methylation-Landscape.ipynb