Raw per-gene counts from RNASeq data (not normalized)

sr320 / ceabigr

Workshop on genomic data integration with a emphasis on epigenetic data (FHL 2022)

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Raw per-gene counts from RNASeq data (not normalized) #37

Closed laurahspencer closed 2 years ago

laurahspencer commented 2 years ago

I'm looking for raw gene counts per individual from the aligned RNASeq data. @kubu4 does this exist? I see the file gene_fpkm.txt, so looking for that but not normalized.

kubu4 commented 2 years ago

Sorry, what do you mean by raw gene counts?

laurahspencer commented 2 years ago

I think this is what I needed, the transcripts per gene per sample file

https://github.com/epigeneticstoocean/2018_L18-adult-methylation/blob/main/analyses/transcript-counts_per-gene-per-sample.csv?raw=true