Update Gene Expression Data files

[sr320]

Once trimmed data gets through pipeline update files at https://github.com/sr320/ceabigr/wiki/Gene-Expression-Data-Types

also on page provide links to sorted bam.

[kubu4]

Done.

[sr320]

But do not all the other links on that page need to be updated? Revision history looks like only bams added?

[kubu4]

URLs to files won't change, but file contents do. Check revision history in analysis directory, not Wiki

[sr320]

Gotcha! Just wanted to confirm all files were updated before announcing to ceabigr.

[sr320]

can you let me know when all the updated gene expression files have been updated?

[kubu4]

They're updated

[sr320]

what about https://github.com/epigeneticstoocean/2018_L18-adult-methylation/blob/main/data/fpkm-all_transcripts.csv ?

[kubu4]

Good catch! Sorry! That's not in any of the R Markdown scripts I have, so it got missed.

I'll probably be able to get it re-generated this evening, but more likely first thing tomorrow morning.

[sr320]

Thanks, but that is not the only one..

Check revision history in analysis directory, not Wiki 😄

[kubu4]

Ha! Good point! Forgot I decided to break out stuff into other scripts to keep things a bit easier to manage. LOL!

[kubu4]

Think I got 'em all, finally!

[sr320]

getting some 404s https://github.com/sr320/ceabigr/wiki/Gene-Expression-Data-Types#cov-in-transcript

[kubu4]

Where?

[kubu4]

NM!