Enrichment analysis for DMLs - Githubissues

sr320 / ceabigr

Workshop on genomic data integration with a emphasis on epigenetic data (FHL 2022)

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Enrichment analysis for DMLs #95

Closed sr320 closed 3 months ago

sr320 commented 4 months ago

done - added sentences in text - female none, male 100+, supp file in Github - supplemental files directory

yaaminiv commented 4 months ago

where's the code for the gene enrichment?

yaaminiv commented 3 months ago

female enriched terms: https://github.com/sr320/ceabigr/blob/main/output/DML-characterization/fem-DML-BP-FisherTestResults.csv
female enriched terms with annotations: https://github.com/sr320/ceabigr/blob/main/output/DML-characterization/fem-DML-BP-EnrichedGO-geneAnnot.csv
male enriched terms: https://github.com/sr320/ceabigr/blob/main/output/DML-characterization/male-DML-BP-FisherTestResults.csv
male enriched terms with annotations: https://github.com/sr320/ceabigr/blob/main/output/DML-characterization/male-DML-BP-EnrichedGO-geneAnnot.csv
combined file for supp: https://github.com/sr320/ceabigr/blob/main/supplemental-files/DML-enrichment-results.xlsx