Number of DML in genes with shifts in pred transcript/change to max transcript

[yaaminiv]

@sr320 where can I find a list of DML with gene names or transcript IDs?

[yaaminiv]

@sr320 where can I find a list of DML with gene names or transcript IDs?

Made my own lists:

• female DML: https://github.com/sr320/ceabigr/blob/main/output/DML-characterization/female_dml-Gene-wb.bed
• male DML: https://github.com/sr320/ceabigr/blob/main/output/DML-characterization/male_dml-Gene-wb.bed

[yaaminiv]

Lists of genes with predominant isoform shifts as well as DML annotations and DML counts per gene:

• females: https://github.com/sr320/ceabigr/blob/main/output/42-predominant-isoform/fem-pred-isoform-DML-annotations.csv
• males: https://github.com/sr320/ceabigr/blob/main/output/42-predominant-isoform/male-pred-isoform-DML-annotations.csv

[yaaminiv]

List of genes with changes in the max transcripts expressed as well as DML annotations and DML counts per gene:

• females: https://github.com/sr320/ceabigr/blob/main/output/75-max-transcript-enrichment/fem-max-trans-DML-annotations.csv
• males: https://github.com/sr320/ceabigr/blob/main/output/75-max-transcript-enrichment/male-max-trans-DML-annotations.csv