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sr320 / course-fish546-2015

Bioinformatics for Environmental Sciences
https://github.com/sr320/fish546-2015/wiki
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nbviewer cannot display notebooks >25MB #48

Closed kubu4 closed 9 years ago

kubu4 commented 9 years ago

The 503 error that keeps popping up on most of my notebooks is caused by the fact that they are larger than 25MB. Apparently, this is due to a limitation imposed on nbviewer by the Github API:

https://github.com/jupyter/nbviewer/issues/408#issuecomment-74274722

sr320 commented 9 years ago

Interesting- did not know that. Why are notebooks getting that big? Std error? Note I did use '2>' on BSMAP today successfully - will try on blast next.

kubu4 commented 9 years ago

I think stdout, primarily from Cufflinks. However, I haven't had time to determine if stderror is also involved.

sr320 commented 9 years ago

works with blast - I will probably just start doing this if not for just better organization alone

hummingbird_1A93FC67.png
kubu4 commented 9 years ago

Very nice! Will have to give this a go with Cufflinks...

kubu4 commented 9 years ago

This worked perfectly with Cufflinks. Now, my notebook is actually viewable with nbviewer again! Thanks!