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sr320 / course-fish546-2016

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Finding data for class projects #15

Closed yaaminiv closed 7 years ago

yaaminiv commented 7 years ago

Where is a good place to start looking for data for class projects? Personally, I'm looking for shellfish transcriptome data (maybe from an OA experiment?)

jldimond commented 7 years ago

If it were me, I would start looking for articles on say Google Scholar that involved transcriptome analyses of shellfish. The article will almost always provide you with a link to their data. If not, you at least will find out that such data exists and maybe find it on NCBI by doing a search for a certain species.

sr320 commented 7 years ago

Here is a data set from Ostrea lurida where male and female gonads were sequenced - in OA treatment and control

sr320 commented 7 years ago

Related if anyone else is looking.. here is a bunch of NGS data that can be filtered by taxa etc. https://fusiontables.google.com/DataSource?docid=13IxnqIZ_2Xpz_HE-3YcnU_egASYz9ZlA0PYIDGLN&pli=1#rows:id=1