Closed sr320 closed 7 years ago
@sr320 sorry about that! not sure where it went - the link should work now!
@mfisher5 your link does not work
I'm going to wait to mess with my repo until ipyrad finishes, so I will summarize my goals here (everything else should be in there already):
Complete the next ipyrad run and extract data from output. The analysis should finish by Wednesday (I hope).
Start to seriously analyze both ddRAD and EpiRAD data, i.e. make some figures. This will include using STRUCTURE to evaluate population subdivision, PCA/MDS for both datasets, and possibly a heat map for the EpiRAD data. The main question is whether I will keep this to strictly hypothesis testing, or do some exploratory analysis of different variables.
For your repository, please provide a detailed Readme that includes
Once you have updated said Readme, add url below. Feel free to ask for any clarifications, tomorrow during class.