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sr320 / course-fish546-2016

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Using Galaxy to merge files for Quiz #64

Closed yaaminiv closed 7 years ago

yaaminiv commented 7 years ago

I'm working in Galaxy to try and merge the Phel_DEGlist.tab and Phel_transcriptome.fasta files together. So far, I was able to upload the two data sets and convert the Phel_transcriptome.fasta file to a tab file. I also removed the headers from my Phel_DEGlist.tab file. I want to merge these two files together, then convert the product to a .fasta file to use as my database for BLAST. However, I'm running into a few issues.

  1. My Phel_DEGlist.tab file has quotes around the contig name, which I can't figure out how to remove.
  2. Additionally, my Phel_DEGlist.tab file has one column, while my Phel_transcriptome.tab file has two: one for the contain name, and another for the sequence.

Because there are quotes around the contig names, and because all of the data in the Phel_DEGlist.tab file is squished into one column, I can't use the Text Manipulation --> Join function to merge by column names (my ideal situation). Any advice?

yaaminiv commented 7 years ago

Never mind! I figured out how to do all of this in R instead 👍