Once I have ran the analysis in CoGe and can view the methylation data, how can I export sequences in regions of interest in a usable format for blasting? To be specific, I can see how to look at sequences from the reads, but how do I get the genome sequence for a specific section so I'm not blasting a thymine-overrepresented bisulfite short read?
Once I have ran the analysis in CoGe and can view the methylation data, how can I export sequences in regions of interest in a usable format for blasting? To be specific, I can see how to look at sequences from the reads, but how do I get the genome sequence for a specific section so I'm not blasting a thymine-overrepresented bisulfite short read?