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sr320 / course-fish546-2016

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DAVID GO analysis #90

Closed aspanjer closed 7 years ago

aspanjer commented 7 years ago

Here are the two files I'm using in DAVID with Uniprot IDs, my issue is that few of the IDs are recognized by David. These were derived from blasting against only 'reviewed' uniprot proteins. Any help is appreciated...

Background (~120K IDs): uniprot_reviewed.txt

Gene List: ISvCO_uniCodes.txt

sr320 commented 7 years ago

I got 77k once converted some of the IDs- This is great, you will not get all as not all IDs will have associated data.

Plenty of info to get data from..

screenshot

http://eagle.fish.washington.edu/cnidarian/skitch/DAVID_Functional_Annotation_Table_-__DAVID__Database_for_Annotation__Visualization__and_Integrated_Discovery__Laboratory_of_Immunopathogenesis_and_Bioinformatics__LIB___National_Institute_of_Allergies_and_Infectious_Diseases__NIAID___Scienc_1DDE46A4.png

On Wed, Nov 16, 2016 at 9:05 AM aspanjer notifications@github.com wrote:

Here are the two files I'm using in DAVID with Uniprot IDs, my issue is that few of the IDs are recognized by David. These were derived from blasting against only 'reviewed' uniprot proteins. Any help is appreciated...

Background (~120K IDs): uniprot_reviewed.txt https://github.com/sr320/course-fish546-2016/files/595292/uniprot_reviewed.txt

Gene List: ISvCO_uniCodes.txt https://github.com/sr320/course-fish546-2016/files/595294/ISvCO_uniCodes.txt

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