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sr320 / course-fish546-2016

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Experience using Bowtie to align reads on personal computer? #99

Closed laurahspencer closed 7 years ago

laurahspencer commented 7 years ago

I'm curious if anyone has used their personal computer to execute Bowtie to align RNASeq data to a genome index? Curious if this is feasible in terms of time. Thanks!

sr320 commented 7 years ago

You should use one of the several lab computers - ie genefish. You could do it on a personal computer, it is feasible. Presume you are using bowtie, for alignment, to ID SNPs.

On Mon, Dec 5, 2016 at 10:53 AM laurahspencer notifications@github.com wrote:

I'm curious if anyone has used their personal computer to execute Bowtie to align RNASeq data to a genome index? Curious if this is feasible in terms of time. Thanks!

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laurahspencer commented 7 years ago

Thanks! Yep, that's what I'm doing- one step at a time. FYI It took just over an hour on my computer.