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sr320 / course-fish546-2018

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converting ab1. files to FASQ #59

Closed magobu closed 5 years ago

magobu commented 5 years ago

Any one would know how to convert sequence files with .ab1 format to FASTQ? .ab1 files can be open with Geneious software, but I would like to be able to do some analysis using GitBash. Thanks

sr320 commented 5 years ago

segret from emboss looks like a good option. see https://www.biostars.org/p/309727/ for a couple of more that could be run through commandline..

magobu commented 5 years ago

Thanks Steven. I'll try that tomorrow!

Marta Gomez-Buckley PhD Student Fish Systematics and Biodiversity Lab School of Aquatic and Fishery Sciences University of Washington Phone: 206 685-3438

On Sun, Nov 11, 2018 at 4:18 PM, Steven Roberts notifications@github.com wrote:

segret from emboss looks like a good option. see https://www.biostars.org/p/309727/ for a couple of more that could be run through commandline..

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