search

sr320 / course-fish546-2021

1 stars 1 forks source link

MultiQC #87

Open sr320 opened 3 years ago

sr320 commented 3 years ago

Run MultiQC on your data. (https://multiqc.info) Note it is a way to visualize QC of analysis already run. We often think fastqc but there are almost 100 tools supported https://multiqc.info/#supported-tools including, kallisto, stacks, bowtie, samtools etc. so be creative. post a link to where we can see the multiQC report below

see also https://youtu.be/xm40cfOPT_o

skreling commented 3 years ago

https://github.com/fish546-2021/Sam-Metabarcoding/blob/main/Data/Bat_Data/Analyzed/multiqc_report.html

jdduprey commented 3 years ago

https://nbviewer.jupyter.org/github/fish546-2021/joe-benthos/blob/main/analysis/fastqc-out/multiqc_report.html

aspencoyle commented 3 years ago

https://nbviewer.jupyter.org/github/fish546-2021/aidan-hematodinium/blob/main/projects/hematodinium_analysis/output/kallisto_libraries_bairdihemat_transcriptomev2.0/multiqc_report.html

meganewing commented 3 years ago

https://nbviewer.jupyter.org/github/fish546-2021/Megan-project/blob/main/analyses/0224-multiqc/multiqc_report.html

laurel-nave-powers commented 3 years ago

https://nbviewer.jupyter.org/github.com/fish546-2021/Laurel-genes/blob/main/analyses/fastqc/multiqc_report.html The above link doesn't seem to work... so here is this one too: https://github.com/fish546-2021/Laurel-genes/blob/main/analyses/fastqc/multiqc_report.html