Closed lafarga13 closed 7 years ago
@lafarga13 @sr320 Faby close all notebooks, stop the terminal (Ctrl-C), close the terminal session and then anaconda. open a new terminal window and run a) conda install pandas b) conda install -c https://conda.anaconda.org/anaconda biopython this last one installs biopython. After installation run anaconda and then the notebook, if this does not work, we'll see it tomorrow.
no quizo correrlo al final :-1:
so, how to install pandas ???
Logre usar pandas pero en Wakari!!!! no pude desde anaconda
@sr320 @lafarga13 Steven, sorry I couldn't find the file 'analyses/Geoduck-transcriptome-v2_CpG-GOSlim.tab' from the 05-Geoduck-CpG.ipynb. I think I have mange to reproduce the CpG data using biopython and I would like to compare the results. I uploaded a notebook with the information in my repository https://github.com/mdelrio1/mdelrio-panopea1/blob/master/CpG-Geo.ipynb It may need some clean up, but I think it gives the results we need, I'll check tomorrow with Fabiola her problem with pandas Thank you Miguel
@sr320 I already upload the files Geoduck-transcriptome-v2_CpG-GOSlim.tab (all sequences) Geoduck-transcriptome-v3_CpG-GOSlim.tab (without bacteria)
I didn´t see to much changes..
@sr320
Hi Steven!!! Finally I am trying to reproduce what you did in the 05-Geoduck-CpG.ipynb and perl is running in the new computer using Anaconda.
but my jupiter does not recognize this command lines (from 84 step)
import pandas as pd %matplotlib inline import matplotlib.pyplot as plt
What Should I do to run does commands?
this is the message I got…
AttributeError Traceback (most recent call last)