The makefile defines one rule per sample and can be invoked as make HG002.
The input VCF is provided using QUERY_VCF=/path/to/query/vcf
The output folder name can be provided using OUTPUT_PATH=/path/to/output
Call example: make HG002 QUERY_VCF=/path/to/query/vcf OUTPUT_PATH=/path/to/output
This Makefile automatically:
The makefile defines one rule per sample and can be invoked as
make HG002. The input VCF is provided usingQUERY_VCF=/path/to/query/vcfThe output folder name can be provided usingOUTPUT_PATH=/path/to/outputCall example:
make HG002 QUERY_VCF=/path/to/query/vcf OUTPUT_PATH=/path/to/output