sridnona cb_sniffer issues - Githubissues

sridnona / cb_sniffer

mutation(barcode) caller for 10x single cell data

GNU General Public License v3.0

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issues

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cb_sniffer in scATAC data?

#17 AmosFong1 opened 3 months ago
3
Troubleshooting - variants file issues

#16 FredoJones closed 2 years ago
4
Questions regarding VCF file and output files

#15 wbf520qcp closed 2 years ago
10
does _counts_CB.tsv only reports mutant cell barcodes ?

#14 dcruz5h opened 3 years ago
1
questions

#13 louis-jliu opened 4 years ago
1
Description of output files?

#12 smvelazquez opened 4 years ago
1
Column name change for output file AllCounts.tsv

#11 tonycheng521 opened 4 years ago
0
Variant file position 0-based or 1-based?

#10 tonycheng521 closed 4 years ago
2
Indel test

#9 sridnona closed 4 years ago
0
How to input indel variant file?

#8 lightfromdark opened 4 years ago
6
vcf patch

#7 sridnona opened 4 years ago
0
VCF file problem # DEBUG Insufficient columns fields please check variant file

#6 lagzxadr opened 5 years ago
1
failing on line 101: if indel > 0:

#5 lhendrikse opened 5 years ago
4
Variant mapping to tens of thousands of barcodes

#4 s2hui closed 5 years ago
5
add vcf support

#3 sridnona opened 5 years ago
0
Some questions

#2 s2hui opened 5 years ago
4
pysam version

#1 TimoTrefzer closed 5 years ago
3