Closed GoogleCodeExporter closed 9 years ago
We figured out the problem. We were lucky enough to replicate your problem on
another computer and saw the error messages sent to the console. It is not a
java version or package issue.
The data you were using yielded ms_tr=0.0 because the readers aucs were
identical to each other and identical to the average. The ms_tr is in the
denominator of the Hillis degrees of freedom estimate. So DF_Hillis was
infinity. Apparently, some versions of java (or computers) handle infinity
better than others, not sure exactly how or why.
Anyhow, when ms_tr=0.0, we are adding alerts/flags to the software and setting
DF_Hillis to 50. The user will know there is a problem with the Hillis degrees
of freedom and will know the steps taken to continue and produce results.
Do you need a pre-release update that better handles the infinite DF_Hillis?
Original comment by Brandon.Gallas
on 18 Nov 2014 at 4:16
Original issue reported on code.google.com by
Brandon.Gallas
on 17 Nov 2014 at 10:06