FBA case in metabolic_sensitivity.m does not output correct metabolic fluxes

sriram-lab / egem

epigenome scale metabolic modeling for cancer metabolism

MIT License

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FBA case in metabolic_sensitivity.m does not output correct metabolic fluxes #11

Closed ScottCampit closed 5 years ago

ScottCampit commented 5 years ago

I wrote code that outputs the metabolic fluxes for various medium conditions in three separate cases. One case uses FBA as the optimization method for calculating the metabolic fluxes. However, from Shen et al., 2019, the output does not match.

To test:

[x] Use acetylation model in same analysis
- [x] If error, then there is issue with your code
[x] Use new eGEM in Shen et al., analysis
- [x] If error, then there is an issue with your model

ScottCampit commented 5 years ago

Resolved the issue -> it turns out that the epsilon values used were wrong, and scampit wrote a script to resolve that.