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srividya22 / interproscan

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Black-box version of I5 needs to be able to look up pre-calculated results #3

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
The current black-box version of I5 makes a copy of an empty database (empty, 
apart from Signatures / models).  This works well but does not provide a 
mechanism for looking up pre-calculated matches.

Original issue reported on code.google.com by philip.j...@gmail.com on 12 Jul 2010 at 12:49

GoogleCodeExporter commented 9 years ago 
After some experimentation, this will be implemented using BerkeleyDB to 
provide the precalculated matches, running as a lightweight local webservice. 
(Running off Jetty, so it is easy to set up for external users).

This is necessary because while lookup time from BerkeleyDB is in the 
millisecond range (even for a database of half a billion matches) startup time 
for the Berkeley database is expensive and time consuming - around 20 seconds 
in the test.

Original comment by philip.j...@gmail.com on 24 Dec 2010 at 5:25

GoogleCodeExporter commented 9 years ago 
Fixed - in place.

Original comment by philip.j...@gmail.com on 13 Apr 2012 at 3:37