srividya22 / interproscan

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[interhelp #23531] tmhmm interproscan.sh error #43

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago
version:
InterProScan 5.4-47.0
tmhmm-2.0c

command:
interproscan.sh -i Chromosome_1_protein.fasta -f XML,GFF3

Error
/home/apps/scripts/tmhmm data/tmhmm/2.0/TMHMM2.0.model 
/home/data/fus_culmorum/036A_Manuscript_Fgraminearum_g                        
ome_reannotation/Chromosome-1_reannotation/publishable/temp/pear.rothamsted.ac.u
k_20140714_151840036_fpaz//jobTMHMM-2.0c/0                        
00000002989_000000003038.fasta -N 1 -PrintNumbers -background 0.081 0.015 0.054 
0.061 0.040 0.068 0.022 0.057 0.056 0.093                         0.025 0.045 
0.049 0.039 0.057 0.068 0.058 0.067 0.013 0.032
Option n is ambiguous (no-d, no-html, no-plot, no-short, no-v1, nod, nohtml, 
noplot, noshort, nov1)
Unknown option: printnumbers
Unknown option: background
Error on command line at /home/apps/scripts/tmhmm line 32.

Original issue reported on code.google.com by rob234k...@gmail.com on 14 Jul 2014 at 3:03

GoogleCodeExporter commented 9 years ago

Original comment by Maxim.Sc...@gmail.com on 16 Jul 2014 at 1:43

GoogleCodeExporter commented 9 years ago

Original comment by Maxim.Sc...@gmail.com on 4 Aug 2014 at 8:30