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ssadedin / bazam

A read extraction and realignment tool for next generation sequencing data
GNU Lesser General Public License v2.1
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feature request - colorspace reversion #25

Open berntpopp opened 4 years ago

berntpopp commented 4 years ago

Dear Simon,

for a project I would like to use bazam to revert SOLID colorspace BAm files back to colorspace fastq using bazam. Currently bazam gives me the aligned sequence and qualities from SAM format columns 10 and 11, respectively. Could you add an option to replace these with certain tags (e.g. "CS:Z:" and "CQ:Z:" in my case)? Best regards, Bernt