Closed BenKaehler closed 8 years ago
Hi @BenKaehler, this looks like a problem in the documentation that must have occurred when we ported it over from Google Code. The *
character should only appear singly, not doubly in those expressions:
run { "input_%.txt" * [ hello + world ] }
Fixed by da18ed1.
Thanks @ssadedin! That's fixed my immediate problem.
You may wish to have another look at that doc, however, because it's pretty mangled. As I said above, nice_to_see_you
is missing altogether. Also, **
appears in the text, and several of the examples look badly broken (at least to a non-groovy speaker like me). For example:
Bpipe.run {
hello + [}
Thanks @BenKaehler - Is that last example on the same page? I couldn't find it.
Sorry @ssadedin, you're right, that example appears to have been fixed in the repo.
That example comes from the online docs (http://bpipe-test-documentation.readthedocs.org/en/latest/Language/ParallelTasks/), and then I somehow ended up looking at looking at a forked version (https://github.com/lonsbio/bpipe/blob/master/docs/Language/ParallelTasks.md).
Dear bpipe,
I'm trying to run an example in the "Running Pipeline Stages in Parallel", but it doesn't appear to work. I'm using the bpipe-0.9.9 release on a Mac.
Firstly, the "nice_to_see_you" stage isn't defined anywhere, so I've removed it from the script, which now looks like this:
I've touched two local files,
input_1.txt
andinput_2.txt
.My session follows. Any help gratefully accepted.
Thanks, Ben