ssandrews / Smoldyn

Smoldyn is a particle-based biochemical simulator for modeling molecular diffusion, surface interactions, and chemical reactions

GNU General Public License v3.0

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Closed dilawar closed 3 years ago

dilawar commented 3 years ago

Had to disable one test in test_biosimulator.py using pytest.mark.ignore. It was causing seg-fault on GH. Locally it was running fine.
Refactored the pipeline a bit to simplify xvfb setup.

jonrkarr commented 3 years ago

The underlying issue is likely a regression in Smoldyn which created a segmentation fault. Skipping the test will mask this.

dilawar commented 3 years ago

The underlying issue is likely a regression in Smoldyn which created a segmentation fault. Skipping the test will mask this.

Unfortunately, I am unable to reproduce it locally: all tests are passing just fine with python3.9+Linux. I'll leave it open for now.

dilawar commented 3 years ago

114 supersede it.