search

ssec-jhu / bluephos

automated computational tool streamlining the development and analysis of blue phosphorescent materials
BSD 3-Clause "New" or "Revised" License
1 stars 1 forks source link

Bump the all-minor-and-patch-dependency-updates group with 5 updates #72

Closed dependabot[bot] closed 2 weeks ago

dependabot[bot] commented 1 month ago

Bumps the all-minor-and-patch-dependency-updates group with 5 updates:

Package From To
tox 4.15.1 4.16.0
pytest 8.2.2 8.3.2
ruff 0.5.0 0.5.5
ray[default] 2.31.0 2.34.0
torch 2.3.1 2.4.0

Updates tox from 4.15.1 to 4.16.0

Release notes

Sourced from tox's releases.

4.16.0

What's Changed

New Contributors

Full Changelog: https://github.com/tox-dev/tox/compare/4.15.1...4.16.0

Changelog

Sourced from tox's changelog.

v4.16.0 (2024-07-02)

Bugfixes - 4.16.0

- - Add ``windir`` to the default list of Windows ``pass_env`` environment variables. - by :user:`kurtmckee` (:issue:`3302`)

Improved Documentation - 4.16.0

    • Fix typo in configuration example and fix broken link to code style guide. - by :user:srenfo (:issue:3297)
Commits


Updates pytest from 8.2.2 to 8.3.2

Release notes

Sourced from pytest's releases.

8.3.2

pytest 8.3.2 (2024-07-24)

Bug fixes

  • #12652: Resolve regression [conda]{.title-ref} environments where no longer being automatically detected.

    -- by RonnyPfannschmidt{.interpreted-text role="user"}

8.3.1

pytest 8.3.1 (2024-07-20)

The 8.3.0 release failed to include the change notes and docs for the release. This patch release remedies this. There are no other changes.

8.3.0

pytest 8.3.0 (2024-07-20)

New features

  • #12231: Added [--xfail-tb]{.title-ref} flag, which turns on traceback output for XFAIL results.

    • If the [--xfail-tb]{.title-ref} flag is not given, tracebacks for XFAIL results are NOT shown.
    • The style of traceback for XFAIL is set with [--tb]{.title-ref}, and can be [auto|long|short|line|native|no]{.title-ref}.
    • Note: Even if you have [--xfail-tb]{.title-ref} set, you won't see them if [--tb=no]{.title-ref}.

    Some history:

    With pytest 8.0, [-rx]{.title-ref} or [-ra]{.title-ref} would not only turn on summary reports for xfail, but also report the tracebacks for xfail results. This caused issues with some projects that utilize xfail, but don't want to see all of the xfail tracebacks.

    This change detaches xfail tracebacks from [-rx]{.title-ref}, and now we turn on xfail tracebacks with [--xfail-tb]{.title-ref}. With this, the default [-rx]{.title-ref}/ [-ra]{.title-ref} behavior is identical to pre-8.0 with respect to xfail tracebacks. While this is a behavior change, it brings default behavior back to pre-8.0.0 behavior, which ultimately was considered the better course of action.

  • #12281: Added support for keyword matching in marker expressions.

    Now tests can be selected by marker keyword arguments. Supported values are int{.interpreted-text role="class"}, (unescaped) str{.interpreted-text role="class"}, bool{.interpreted-text role="class"} & None{.interpreted-text role="data"}.

    See marker examples <marker_keyword_expression_example>{.interpreted-text role="ref"} for more information.

    -- by lovetheguitar{.interpreted-text role="user"}

  • #12567: Added --no-fold-skipped command line option.

    If this option is set, then skipped tests in short summary are no longer grouped by reason but all tests are printed individually with their nodeid in the same way as other statuses.

    -- by pbrezina{.interpreted-text role="user"}

... (truncated)

Commits
  • bbcec9c Prepare release version 8.3.2
  • 78fe8b6 Merge pull request #12657 from pytest-dev/patchback/backports/8.3.x/6c806b499...
  • 238bad2 Merge pull request #12656 from RonnyPfannschmidt/fix-12652-detect-conda-env
  • ae6034a Merge pull request #12641 from pytest-dev/patchback/backports/8.3.x/c03989cee...
  • 31337ab Merge pull request #12640 from pytest-dev/update-user
  • ca3070b Merge pull request #12637 from pytest-dev/release-8.3.1
  • de98446 Prepare release version 8.3.1
  • bd0a042 Merge pull request #12636 from pytest-dev/update-release-notes
  • 664325b doc/changelog: update 8.3.0 notes
  • 19d225d Merge pull request #12635 from pytest-dev/release-8.3.0
  • Additional commits viewable in compare view


Updates ruff from 0.5.0 to 0.5.5

Release notes

Sourced from ruff's releases.

0.5.5

Release Notes

Preview features

  • [fastapi] Implement fastapi-redundant-response-model (FAST001) and fastapi-non-annotated-dependency(FAST002) (#11579)
  • [pydoclint] Implement docstring-missing-exception (DOC501) and docstring-extraneous-exception (DOC502) (#11471)

Rule changes

  • [numpy] Fix NumPy 2.0 rule for np.alltrue and np.sometrue (#12473)
  • [numpy] Ignore NPY201 inside except blocks for compatibility with older numpy versions (#12490)
  • [pep8-naming] Avoid applying ignore-names to self and cls function names (N804, N805) (#12497)

Formatter

  • Fix incorrect placement of leading function comment with type params (#12447)

Server

  • Do not bail code action resolution when a quick fix is requested (#12462)

Bug fixes

  • Fix Ord implementation of cmp_fix (#12471)
  • Raise syntax error for unparenthesized generator expression in multi-argument call (#12445)
  • [pydoclint] Fix panic in DOC501 reported in #12428 (#12435)
  • [flake8-bugbear] Allow singleton tuples with starred expressions in B013 (#12484)

Documentation

  • Add Eglot setup guide for Emacs editor (#12426)
  • Add note about the breaking change in nvim-lspconfig (#12507)
  • Add note to include notebook files for native server (#12449)
  • Add setup docs for Zed editor (#12501)

Contributors

... (truncated)

Changelog

Sourced from ruff's changelog.

0.5.5

Preview features

  • [fastapi] Implement fastapi-redundant-response-model (FAST001) and fastapi-non-annotated-dependency(FAST002) (#11579)
  • [pydoclint] Implement docstring-missing-exception (DOC501) and docstring-extraneous-exception (DOC502) (#11471)

Rule changes

  • [numpy] Fix NumPy 2.0 rule for np.alltrue and np.sometrue (#12473)
  • [numpy] Ignore NPY201 inside except blocks for compatibility with older numpy versions (#12490)
  • [pep8-naming] Avoid applying ignore-names to self and cls function names (N804, N805) (#12497)

Formatter

  • Fix incorrect placement of leading function comment with type params (#12447)

Server

  • Do not bail code action resolution when a quick fix is requested (#12462)

Bug fixes

  • Fix Ord implementation of cmp_fix (#12471)
  • Raise syntax error for unparenthesized generator expression in multi-argument call (#12445)
  • [pydoclint] Fix panic in DOC501 reported in #12428 (#12435)
  • [flake8-bugbear] Allow singleton tuples with starred expressions in B013 (#12484)

Documentation

  • Add Eglot setup guide for Emacs editor (#12426)
  • Add note about the breaking change in nvim-lspconfig (#12507)
  • Add note to include notebook files for native server (#12449)
  • Add setup docs for Zed editor (#12501)

0.5.4

Rule changes

  • [ruff] Rename RUF007 to zip-instead-of-pairwise (#12399)

Bug fixes

  • [flake8-builtins] Avoid shadowing diagnostics for @override methods (#12415)
  • [flake8-comprehensions] Insert parentheses for multi-argument generators (#12422)
  • [pydocstyle] Handle escaped docstrings within docstring (D301) (#12192)

Documentation

  • Fix GitHub link to Neovim setup (#12410)

... (truncated)

Commits
  • fc16d8d Bump version to 0.5.5 (#12510)
  • 175e5d7 Add missing traceback line in f-string-in-exception docstring. (#12508)
  • c03f257 Add note about the breaking change in nvim-lspconfig (#12507)
  • 6bbb4a2 Add setup docs for Zed editor (#12501)
  • 2ce3e3a Fix the search path tests on MacOS (#12503)
  • 2a64ccc Avoid applying ignore-names to self and cls function names (#12497)
  • 928ffd6 Ignore NPY201 inside except blocks for compatibility with older numpy ver...
  • e52be09 [red-knot] Improve validation for search paths (#12376)
  • 8890735 [flake8-bugbear] Allow singleton tuples with starred expressions in B013 (#12...
  • eac965e [red-knot] Watch search paths (#12407)
  • Additional commits viewable in compare view


Updates ray[default] from 2.31.0 to 2.34.0

Release notes

Sourced from ray[default]'s releases.

Release 2.34.0 Notes

Ray Libraries

Ray Data

💫 Enhancements:

  • Add better support for UDF returns from list of datetime objects (#46762)

🔨 Fixes:

  • Remove read task warning if size bytes not set in metadata (#46765)

📖 Documentation:

  • Fix read_tfrecords() docstring to display tfx-bsl tip (#46717)
  • Update Dataset.zip() docs (#46757)

Ray Train

🔨 Fixes:

  • Sort workers by node ID rather than by node IP (#46163)

🏗 Architecture refactoring:

  • Remove dead RayDatasetSpec (#46764)

RLlib

🎉 New Features:

  • Offline RL support on new API stack:
    • Initial design for Ray-Data based offline RL Algos (on new API stack). (#44969)
    • Add user-defined schemas for data loading. (#46738)
    • Make data pipeline better configurable and tuneable for users. (#46777)

💫 Enhancements:

  • Move DQN into the TargetNetworkAPI (and deprecate RLModuleWithTargetNetworksInterface). (#46752)

🔨 Fixes:

  • Numpy version fix: Rename all np.product usage to np.prod (#46317)

📖 Documentation:

  • Examples for new API stack: Add 2 (count-based) curiosity examples. (#46737)
  • Remove RLlib CLI from docs (soon to be deprecated and replaced by python API). (#46724)

🏗 Architecture refactoring:

  • Cleanup, rename, clarify: Algorithm.workers/evaluation_workers, local_worker(), etc.. (#46726)

Ray Core

🏗 Architecture refactoring:

  • New python GcsClient binding (#46186)

... (truncated)

Commits
  • fc87217 Update Ray version to 2.34.0 (#46851)
  • 69f3218 [data] Add better support for udf returns from list of datetime objects (#46762)
  • 8d2b459 [Data] Remove read task warning if size bytes not set in metadata (#46765)
  • 89a728d [release auto] use python3 for interpreter (#46800)
  • ecfb064 [RLlib; Offline RL] Make data pipeline better configurable and tuneable for u...
  • ff789b9 Revert "[doc][build/02] remove local site-package files from global cache" (#...
  • 6af3f8c [doc][build/02] remove local site-package files from global cache (#46781)
  • 6b81634 [air examples] remove runtime env on dependencies (#46759)
  • 7af3ff0 [doc][build/01] BuildCache api class (#46780)
  • eac96b5 [py312] Fix or skip tests+examples for Tune dependencies that do not support ...
  • Additional commits viewable in compare view


Updates torch from 2.3.1 to 2.4.0

Release notes

Sourced from torch's releases.

PyTorch 2.4: Python 3.12, AOTInductor freezing, libuv backend for TCPStore

PyTorch 2.4 Release Notes

  • Highlights
  • Tracked Regressions
  • Backward incompatible changes
  • Deprecations
  • New features
  • Improvements
  • Bug Fixes
  • Performance
  • Documentation
  • Developers
  • Security

Highlights

We are excited to announce the release of PyTorch® 2.4! PyTorch 2.4 adds support for the latest version of Python (3.12) for torch.compile. AOTInductor freezing gives developers running AOTInductor more performance based optimizations by allowing the serialization of MKLDNN weights. As well, a new default TCPStore server backend utilizing libuv has been introduced which should significantly reduce initialization times for users running large-scale jobs. Finally, a new Python Custom Operator API makes it easier than before to integrate custom kernels into PyTorch, especially for torch.compile.

This release is composed of 3661 commits and 475 contributors since PyTorch 2.3. We want to sincerely thank our dedicated community for your contributions. As always, we encourage you to try these out and report any issues as we improve 2.4. More information about how to get started with the PyTorch 2-series can be found at our Getting Started page.

... (truncated)

Commits


Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

Dependabot commands and options
You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore major version` will close this group update PR and stop Dependabot creating any more for the specific dependency's major version (unless you unignore this specific dependency's major version or upgrade to it yourself) - `@dependabot ignore minor version` will close this group update PR and stop Dependabot creating any more for the specific dependency's minor version (unless you unignore this specific dependency's minor version or upgrade to it yourself) - `@dependabot ignore ` will close this group update PR and stop Dependabot creating any more for the specific dependency (unless you unignore this specific dependency or upgrade to it yourself) - `@dependabot unignore ` will remove all of the ignore conditions of the specified dependency - `@dependabot unignore ` will remove the ignore condition of the specified dependency and ignore conditions
amitschang commented 1 month ago

@xiangchenjhu , could you fix the lint issue first? I think it is pretty straightforward

dependabot[bot] commented 2 weeks ago

Looks like these dependencies are updatable in another way, so this is no longer needed.