ssec-jhu / bluephos

automated computational tool streamlining the development and analysis of blue phosphorescent materials
BSD 3-Clause "New" or "Revised" License
1 stars 1 forks source link

Bump the all-minor-and-patch-dependency-updates group across 1 directory with 6 updates #78

Closed dependabot[bot] closed 2 months ago

dependabot[bot] commented 2 months ago

Bumps the all-minor-and-patch-dependency-updates group with 6 updates in the / directory:

Package From To
pytest 8.2.2 8.3.2
ruff 0.5.0 0.6.3
tox 4.15.1 4.18.0
ray[default] 2.31.0 2.35.0
torch 2.3.1 2.4.0
nbsphinx 0.9.4 0.9.5

Updates pytest from 8.2.2 to 8.3.2

Release notes

Sourced from pytest's releases.

8.3.2

pytest 8.3.2 (2024-07-24)

Bug fixes

  • #12652: Resolve regression [conda]{.title-ref} environments where no longer being automatically detected.

    -- by RonnyPfannschmidt{.interpreted-text role="user"}

8.3.1

pytest 8.3.1 (2024-07-20)

The 8.3.0 release failed to include the change notes and docs for the release. This patch release remedies this. There are no other changes.

8.3.0

pytest 8.3.0 (2024-07-20)

New features

  • #12231: Added [--xfail-tb]{.title-ref} flag, which turns on traceback output for XFAIL results.

    • If the [--xfail-tb]{.title-ref} flag is not given, tracebacks for XFAIL results are NOT shown.
    • The style of traceback for XFAIL is set with [--tb]{.title-ref}, and can be [auto|long|short|line|native|no]{.title-ref}.
    • Note: Even if you have [--xfail-tb]{.title-ref} set, you won't see them if [--tb=no]{.title-ref}.

    Some history:

    With pytest 8.0, [-rx]{.title-ref} or [-ra]{.title-ref} would not only turn on summary reports for xfail, but also report the tracebacks for xfail results. This caused issues with some projects that utilize xfail, but don't want to see all of the xfail tracebacks.

    This change detaches xfail tracebacks from [-rx]{.title-ref}, and now we turn on xfail tracebacks with [--xfail-tb]{.title-ref}. With this, the default [-rx]{.title-ref}/ [-ra]{.title-ref} behavior is identical to pre-8.0 with respect to xfail tracebacks. While this is a behavior change, it brings default behavior back to pre-8.0.0 behavior, which ultimately was considered the better course of action.

  • #12281: Added support for keyword matching in marker expressions.

    Now tests can be selected by marker keyword arguments. Supported values are int{.interpreted-text role="class"}, (unescaped) str{.interpreted-text role="class"}, bool{.interpreted-text role="class"} & None{.interpreted-text role="data"}.

    See marker examples <marker_keyword_expression_example>{.interpreted-text role="ref"} for more information.

    -- by lovetheguitar{.interpreted-text role="user"}

  • #12567: Added --no-fold-skipped command line option.

    If this option is set, then skipped tests in short summary are no longer grouped by reason but all tests are printed individually with their nodeid in the same way as other statuses.

    -- by pbrezina{.interpreted-text role="user"}

... (truncated)

Commits
  • bbcec9c Prepare release version 8.3.2
  • 78fe8b6 Merge pull request #12657 from pytest-dev/patchback/backports/8.3.x/6c806b499...
  • 238bad2 Merge pull request #12656 from RonnyPfannschmidt/fix-12652-detect-conda-env
  • ae6034a Merge pull request #12641 from pytest-dev/patchback/backports/8.3.x/c03989cee...
  • 31337ab Merge pull request #12640 from pytest-dev/update-user
  • ca3070b Merge pull request #12637 from pytest-dev/release-8.3.1
  • de98446 Prepare release version 8.3.1
  • bd0a042 Merge pull request #12636 from pytest-dev/update-release-notes
  • 664325b doc/changelog: update 8.3.0 notes
  • 19d225d Merge pull request #12635 from pytest-dev/release-8.3.0
  • Additional commits viewable in compare view


Updates ruff from 0.5.0 to 0.6.3

Release notes

Sourced from ruff's releases.

0.6.3

Release Notes

Preview features

  • [flake8-simplify] Extend open-file-with-context-handler to work with dbm.sqlite3 (SIM115) (#13104)
  • [pycodestyle] Disable E741 in stub files (.pyi) (#13119)
  • [pydoclint] Avoid DOC201 on explicit returns in functions that only return None (#13064)

Rule changes

  • [flake8-async] Disable check for asyncio before Python 3.11 (ASYNC109) (#13023)

Bug fixes

  • [FastAPI] Avoid introducing invalid syntax in fix for fast-api-non-annotated-dependency (FAST002) (#13133)
  • [flake8-implicit-str-concat] Normalize octals before merging concatenated strings in single-line-implicit-string-concatenation (ISC001) (#13118)
  • [flake8-pytest-style] Improve help message for pytest-incorrect-mark-parentheses-style (PT023) (#13092)
  • [pylint] Avoid autofix for calls that aren't min or max as starred expression (PLW3301) (#13089)
  • [ruff] Add datetime.time, datetime.tzinfo, and datetime.timezone as immutable function calls (RUF009) (#13109)
  • [ruff] Extend comment deletion for RUF100 to include trailing text from noqa directives while preserving any following comments on the same line, if any (#13105)
  • Fix dark theme on initial page load for the Ruff playground (#13077)

Contributors

Install ruff 0.6.3

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://github.com/astral-sh/ruff/releases/download/0.6.3/ruff-installer.sh | sh

Install prebuilt binaries via powershell script

... (truncated)

Changelog

Sourced from ruff's changelog.

0.6.3

Preview features

  • [flake8-simplify] Extend open-file-with-context-handler to work with dbm.sqlite3 (SIM115) (#13104)
  • [pycodestyle] Disable E741 in stub files (.pyi) (#13119)
  • [pydoclint] Avoid DOC201 on explicit returns in functions that only return None (#13064)

Rule changes

  • [flake8-async] Disable check for asyncio before Python 3.11 (ASYNC109) (#13023)

Bug fixes

  • [FastAPI] Avoid introducing invalid syntax in fix for fast-api-non-annotated-dependency (FAST002) (#13133)
  • [flake8-implicit-str-concat] Normalize octals before merging concatenated strings in single-line-implicit-string-concatenation (ISC001) (#13118)
  • [flake8-pytest-style] Improve help message for pytest-incorrect-mark-parentheses-style (PT023) (#13092)
  • [pylint] Avoid autofix for calls that aren't min or max as starred expression (PLW3301) (#13089)
  • [ruff] Add datetime.time, datetime.tzinfo, and datetime.timezone as immutable function calls (RUF009) (#13109)
  • [ruff] Extend comment deletion for RUF100 to include trailing text from noqa directives while preserving any following comments on the same line, if any (#13105)
  • Fix dark theme on initial page load for the Ruff playground (#13077)

0.6.2

Preview features

  • [flake8-simplify] Extend open-file-with-context-handler to work with other standard-library IO modules (SIM115) (#12959)
  • [ruff] Avoid unused-async for functions with FastAPI route decorator (RUF029) (#12938)
  • [ruff] Ignore fstring-missing-syntax (RUF027) for fastAPI paths (#12939)
  • [ruff] Implement check for Decimal called with a float literal (RUF032) (#12909)

Rule changes

  • [flake8-bugbear] Update diagnostic message when expression is at the end of function (B015) (#12944)
  • [flake8-pyi] Skip type annotations in string-or-bytes-too-long (PYI053) (#13002)
  • [flake8-type-checking] Always recognise relative imports as first-party (#12994)
  • [flake8-unused-arguments] Ignore unused arguments on stub functions (ARG001) (#12966)
  • [pylint] Ignore augmented assignment for self-cls-assignment (PLW0642) (#12957)

Server

  • Show full context in error log messages (#13029)

Bug fixes

  • [pep8-naming] Don't flag from imports following conventional import names (N817) (#12946)
  • [pylint] - Allow __new__ methods to have cls as their first argument even if decorated with @staticmethod for bad-staticmethod-argument (PLW0211) (#12958)

Documentation

... (truncated)

Commits
  • ee258ca Bump version to 0.6.3 (#13152)
  • b4d9d26 Update faq.md to highlight changes to src (#13145)
  • a998320 [ruff] - extend comment deletions for unused-noqa (RUF100) (#13105)
  • 770ef2a [red-knot] support deferred evaluation of type expressions (#13131)
  • c6023c0 [red-knot] Add docs on using RAYON_NUM_THREADS for better logging (#13140)
  • df694ca [FastAPI] Avoid introducing invalid syntax in fix for `fast-api-non-annotat...
  • 2e75cfb Format PYI examples in docs as .pyi-file snippets (#13116)
  • cfafaa7 [red-knot] Remove very noisy tracing call when resolving ImportFrom stateme...
  • 3e9c7ad Replace crates by dependi for VS Code Dev Container (#13125)
  • 81cd438 red-knot: infer and display ellipsis type (#13124)
  • Additional commits viewable in compare view


Updates tox from 4.15.1 to 4.18.0

Release notes

Sourced from tox's releases.

4.18.0

What's Changed

Full Changelog: https://github.com/tox-dev/tox/compare/4.17.1...4.18.0

4.17.1

What's Changed

New Contributors

Full Changelog: https://github.com/tox-dev/tox/compare/4.17.0...4.17.1

4.17.0

What's Changed

New Contributors

Full Changelog: https://github.com/tox-dev/tox/compare/4.16.0...4.17.0

4.16.0

What's Changed

New Contributors

Full Changelog: https://github.com/tox-dev/tox/compare/4.15.1...4.16.0

Changelog

Sourced from tox's changelog.

v4.18.0 (2024-08-13)

Features - 4.18.0

- Suppress spinner in parallel runs in CI - by :user:`ziima`. (:issue:`3318`)

Bugfixes - 4.18.0

  • Boost temporary directories cleanup in tests - by :user:ziima. (:issue:3278)
  • Fix absolute base python paths conflicting - by :user:gaborbernat. (:issue:3325)

v4.17.1 (2024-08-07)

Bugfixes - 4.17.1

- Support for running ``-e <major>.<minor>`` has been lost, fixing it - by :user:`gaborbernat`. (:issue:`2849`)
- ``base_python`` now accepts absolute paths to interpreter executable - by :user:`paveldikov`. (:issue:`3191`)

v4.17.0 (2024-08-05)

Features - 4.17.0

  • Add graalpy prefix as a supported base python (:issue:3312)
  • Add :ref:on_platform core configuration holding the tox platform and do not install package when exec an environment
    • by :user:gaborbernat. (:issue:3315)

Bugfixes - 4.17.0

- Add table with default environment variables per OS (:issue:`2753`)

v4.16.0 (2024-07-02)

Bugfixes - 4.16.0

    • Add windir to the default list of Windows pass_env environment variables. - by :user:kurtmckee (:issue:3302)

Improved Documentation - 4.16.0

- - Fix typo in configuration example and fix broken link to code style guide. - by :user:`srenfo` (:issue:`3297`)
Commits


Updates ray[default] from 2.31.0 to 2.35.0

Release notes

Sourced from ray[default]'s releases.

Ray-2.35.0

Notice: Starting from this release, pip install ray[all] will not include ray[cpp], and will not install the respective ray-cpp package. To install everything that includes ray-cpp, one can use pip install ray[cpp-all] instead.

Ray Libraries

Ray Data

🎉 New Features:

  • Upgrade supported Arrow version from 16 to 17 (#47034)
  • Add support for reading from Iceberg (#46889)

💫 Enhancements:

  • Various Progress Bar UX improvements (#46816, #46801, #46826, #46692, #46699, #46974, #46928, #47029, #46924, #47120, #47095, #47106)
  • Try get size_bytes from metadata and consolidate metadata methods (#46862)
  • Improve warning message when read task is large (#46942)
  • Extend API to enable passing sample weights via ray.dataset.to_tf (#45701)
  • Add a parameter to allow overriding LanceDB scanner options (#46975)
  • Add failure retry logic for read_lance (#46976)
  • Clarify warning for reading old Parquet data (#47049)
  • Move datasource implementations to _internal subpackage (#46825)
  • Handle logs from tensor extensions (#46943)

🔨 Fixes:

  • Change type of DataContext.retried_io_errors from tuple to list (#46884)
  • Make Parquet tests more robust and expose Parquet logic (#46944)
  • Change pickling log level from warning to debug (#47032)
  • Add validation for shuffle arg (#47055)
  • Fix validation bug when size=0 in ActorPoolStrategy (#47072)
  • Fix exception in async map (#47110)
  • Fix wrong metrics group for Object Store Memory metrics on Ray Data Dashboard (#47170)
  • Handle errors in SplitCoordinator when generating a new epoch (#47176)

📖 Documentation:

  • Auto-gen GroupedData api (#46925)
  • Fix signature of Rule.plan (#47094)

Ray Train

💫 Enhancements:

  • [train] Updates to support xgboost==2.1.0 (#46667)
  • [train] Add hardware stats (#46719)

Ray Tune

🔨 Fixes:

  • [RLlib; Tune] Fix WandB metric overlap after restore from checkpoint. (#46897)

Ray Serve

💫 Enhancements:

  • Improved handling of replica death and replica unavailability in deployment handle routers before controller restarts replica (#47008)
  • Eagerly create routers in proxy for better GCS fault tolerance (#47031)
  • Immediately send ping in router when receiving new replica set (#47053)

... (truncated)

Commits
  • c5d536d [docker] Update latest Docker dependencies for 2.35.0 release (#47374)
  • ba24879 [Data] [Release Test] Use worker node instead of head node (#47256)
  • e0bcd69 [Data] [Release Test] Add AWS ACCESS_DENIED as retryable exception for multi-...
  • 4659bab [core] fix NewGcsClient initial connect timeout formula (#47254)
  • d6b822b [release] change version to 2.35.0 (#47187)
  • 7f8725c [Doc] Run pre-commit on rllib docs (#47005)
  • f09a35f [Doc] Run pre-commit on train docs (#47107)
  • 6ba9a05 [core] Remove serialized_allocated_resource_instances from RuntimeEnv creatio...
  • 9c0e1c4 [core][dashboard] configurable timeouts (#47181)
  • ee3625d [data] Handle errors in SplitCoordinator when generating a new epoch (#47176)
  • Additional commits viewable in compare view


Updates torch from 2.3.1 to 2.4.0

Release notes

Sourced from torch's releases.

PyTorch 2.4: Python 3.12, AOTInductor freezing, libuv backend for TCPStore

PyTorch 2.4 Release Notes

  • Highlights
  • Tracked Regressions
  • Backward incompatible changes
  • Deprecations
  • New features
  • Improvements
  • Bug Fixes
  • Performance
  • Documentation
  • Developers
  • Security

Highlights

We are excited to announce the release of PyTorch® 2.4! PyTorch 2.4 adds support for the latest version of Python (3.12) for torch.compile. AOTInductor freezing gives developers running AOTInductor more performance based optimizations by allowing the serialization of MKLDNN weights. As well, a new default TCPStore server backend utilizing libuv has been introduced which should significantly reduce initialization times for users running large-scale jobs. Finally, a new Python Custom Operator API makes it easier than before to integrate custom kernels into PyTorch, especially for torch.compile.

This release is composed of 3661 commits and 475 contributors since PyTorch 2.3. We want to sincerely thank our dedicated community for your contributions. As always, we encourage you to try these out and report any issues as we improve 2.4. More information about how to get started with the PyTorch 2-series can be found at our Getting Started page.

... (truncated)

Commits


Updates nbsphinx from 0.9.4 to 0.9.5

Release notes

Sourced from nbsphinx's releases.

nbsphinx 0.9.5

https://pypi.org/project/nbsphinx/0.9.5/

  • Miscellaneous fixes
Changelog

Sourced from nbsphinx's changelog.

Version 0.9.5 -- 2024-08-13 -- PyPI__ -- diff__

  • Miscellaneous fixes

__ https://pypi.org/project/nbsphinx/0.9.5/ __ https://github.com/spatialaudio/nbsphinx/compare/0.9.4...0.9.5

Version 0.9.4 -- 2024-05-06 -- PyPI__ -- diff__

  • Require docutils >= 0.18.1
  • Minor fixes, documentation and CI updates

__ https://pypi.org/project/nbsphinx/0.9.4/ __ https://github.com/spatialaudio/nbsphinx/compare/0.9.3...0.9.4

Version 0.9.3 -- 2023-08-27 -- PyPI__ -- diff__

  • Fix gallery regression in Sphinx 7.2

__ https://pypi.org/project/nbsphinx/0.9.3/ __ https://github.com/spatialaudio/nbsphinx/compare/0.9.2...0.9.3

Version 0.9.2 -- 2023-05-24 -- PyPI__ -- diff__

  • Improve support for sphinx_immaterial theme
  • Improve support for links starting with #
  • Add support for in-text citations
  • LaTeX: Add support for admonition titles

__ https://pypi.org/project/nbsphinx/0.9.2/ __ https://github.com/spatialaudio/nbsphinx/compare/0.9.1...0.9.2

Version 0.9.1 -- 2023-03-14 -- PyPI__ -- diff__

  • pandoc: disable "smart" option only for version 2.0+

__ https://pypi.org/project/nbsphinx/0.9.1/ __ https://github.com/spatialaudio/nbsphinx/compare/0.9.0...0.9.1

Version 0.9.0 -- 2023-03-12 -- PyPI__ -- diff__

  • Split nbsphinx.py (a Python module) into:

    • nbsphinx/__init__.py (a Python package)
    • A standalone CSS file nbsphinx-code-cells.css_t
    • LaTeX style file nbsphinx.sty
  • Add custom HTML/CSS for thumbnail galleries

    • Separate CSS file nbsphinx-gallery.css
    • The CSS from Sphinx Gallery ('sphinx_gallery.load_style') cannot be used anymore
  • Use the last image in a notebook as the default thumbnail

__ https://pypi.org/project/nbsphinx/0.9.0/

... (truncated)

Commits
  • ae3c9d9 Release 0.9.5
  • d869daa Copy CSS and SVG files earlier
  • cc292c8 Binder: add ipympl to requirements
  • 00ffc02 DOC: fix broken link
  • cab489c Handle doc2path() API change
  • b0b5274 include-in-latex: make conf.py loading more robust
  • cf5ba4d DOC: remove basicstrap and typlog themes
  • aac22cf Coalesce code cell outputs before getting thumbnail index
  • See full diff in compare view


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