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ssec-jhu / evolver-ng

Next gen eVolver controller for bioreactor project - wip
BSD 3-Clause "New" or "Revised" License
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Bump the all-minor-and-patch-dependency-updates group with 8 updates #97

Closed dependabot[bot] closed 1 month ago

dependabot[bot] commented 1 month ago

Bumps the all-minor-and-patch-dependency-updates group with 8 updates:

Package From To
bandit 1.7.8 1.7.9
pydantic 2.7.2 2.7.4
pydantic-settings 2.2.1 2.3.4
uvicorn[standard] 0.30.0 0.30.1
tox 4.15.0 4.15.1
ruff 0.4.7 0.5.0
pytest 8.2.1 8.2.2
sphinx-book-theme 1.1.2 1.1.3

Updates bandit from 1.7.8 to 1.7.9

Release notes

Sourced from bandit's releases.

1.7.9

What's Changed

New Contributors

Full Changelog: https://github.com/PyCQA/bandit/compare/1.7.8...1.7.9

Commits


Updates pydantic from 2.7.2 to 2.7.4

Release notes

Sourced from pydantic's releases.

v2.7.4 (2024-06-12)

What's Changed

Packaging

Fixes

  • Specify recursive_guard as kwarg in FutureRef._evaluate by @​vfazio in #9612

Full Changelog: https://github.com/pydantic/pydantic/compare/v2.7.3...v2.7.4

v2.7.3 (2024-06-03)

What's Changed

Packaging

Fixes

Full Changelog: https://github.com/pydantic/pydantic/compare/v2.7.2...v2.7.3/*

Changelog

Sourced from pydantic's changelog.

v2.7.4 (2024-06-12)

Github release

What's Changed

Packaging

Fixes

  • Specify recursive_guard as kwarg in FutureRef._evaluate by @​vfazio in #9612

v2.7.3 (2024-06-03)

GitHub release

What's Changed

Packaging

Fixes

Commits


Updates pydantic-settings from 2.2.1 to 2.3.4

Release notes

Sourced from pydantic-settings's releases.

v2.3.4

What's Changed

New Contributors

Full Changelog: https://github.com/pydantic/pydantic-settings/compare/v2.3.3...v2.3.4

v2.3.3

What's Changed

Full Changelog: https://github.com/pydantic/pydantic-settings/compare/v2.3.2...v2.3.3

v2.3.2

What's Changed

New Contributors

Full Changelog: https://github.com/pydantic/pydantic-settings/compare/v2.3.1...v2.3.2

v2.3.1

What's Changed

Full Changelog: https://github.com/pydantic/pydantic-settings/compare/v2.3.0...v2.3.1

v2.3.0

What's Changed

... (truncated)

Commits
  • fe1f950 Prepare release 2.3.4 (#322)
  • 674ebd9 Remove leftover docstring causing warning on pydantic docs build (#321)
  • 7ede0ec Nested pydantic dataclasses and doc fixes. (#317)
  • c2d44a7 add in-place reloading in docs (#316)
  • f1b82d8 Prepare release 2.3.3 (#314)
  • bd294a4 Add CliSettingsSource alias handling for AliasChoices and AliasPath. (#313)
  • abe7cc5 Fix an intriduced bug in parsing json field with discriminated union (#312)
  • b5d4534 Prepare release 2.3.2 (#310)
  • b2e84c2 Fix issue with nested model uppercase field name in case insensitive mode (#309)
  • 0a9faca Fix command line help from argparse formatting problem (#307)
  • Additional commits viewable in compare view


Updates uvicorn[standard] from 0.30.0 to 0.30.1

Release notes

Sourced from uvicorn[standard]'s releases.

Version 0.30.1

Fixed

  • Allow horizontal tabs \t in response header values (#2345)

Full Changelog: https://github.com/encode/uvicorn/compare/0.30.0...0.30.1

Changelog

Sourced from uvicorn[standard]'s changelog.

0.30.1 (2024-06-02)

Fixed

  • Allow horizontal tabs \t in response header values (#2345)
Commits


Updates tox from 4.15.0 to 4.15.1

Release notes

Sourced from tox's releases.

4.15.1

What's Changed

New Contributors

Full Changelog: https://github.com/tox-dev/tox/compare/4.15.0...4.15.1

Changelog

Sourced from tox's changelog.

v4.15.1 (2024-06-05)

Features - 4.15.1

- Fix ``skip_missing_interpreters`` option for ``package = wheel`` (:issue:`3269`)

Bugfixes - 4.15.1

  • Fix section substitution with setenv. (:issue:3262)
  • Allow ConfigSet.add_config to receive parameterized generics for of_type. (:issue:3288)
Commits
  • 079000f release 4.15.1
  • 489ad82 Fix section substitution with setenv (#3289)
  • 7317225 Allow ConfigSet.add_config to receive parameterized generics for of_type....
  • 406f808 [pre-commit.ci] pre-commit autoupdate (#3283)
  • 5c28d9c [pre-commit.ci] pre-commit autoupdate (#3279)
  • f4e257c Fix broad build privileges @ GHA release workflow (#3281)
  • 77564a1 Fixed typo in user guide.
  • e2f66b1 [pre-commit.ci] auto fixes from pre-commit.com hooks
  • 9afc9cb [pre-commit.ci] pre-commit autoupdate
  • 3db9822 fix skip with package = wheel (#3269)
  • See full diff in compare view


Updates ruff from 0.4.7 to 0.5.0

Release notes

Sourced from ruff's releases.

0.5.0

Release Notes

Check out the blog post for a migration guide and overview of the changes!

Breaking changes

See also, the "Remapped rules" section which may result in disabled rules.

  • Follow the XDG specification to discover user-level configurations on macOS (same as on other Unix platforms)
  • Selecting ALL now excludes deprecated rules
  • The released archives now include an extra level of nesting, which can be removed with --strip-components=1 when untarring.
  • The release artifact's file name no longer includes the version tag. This enables users to install via /latest URLs on GitHub.
  • The diagnostic ranges for some flake8-bandit rules were modified (#10667).

Deprecations

The following rules are now deprecated:

Remapped rules

The following rules have been remapped to new rule codes:

Stabilization

The following rules have been stabilized and are no longer in preview:

... (truncated)

Changelog

Sourced from ruff's changelog.

0.5.0

Check out the blog post for a migration guide and overview of the changes!

Breaking changes

See also, the "Remapped rules" section which may result in disabled rules.

  • Follow the XDG specification to discover user-level configurations on macOS (same as on other Unix platforms)
  • Selecting ALL now excludes deprecated rules
  • The released archives now include an extra level of nesting, which can be removed with --strip-components=1 when untarring.
  • The release artifact's file name no longer includes the version tag. This enables users to install via /latest URLs on GitHub.
  • The diagnostic ranges for some flake8-bandit rules were modified (#10667).

Deprecations

The following rules are now deprecated:

Remapped rules

The following rules have been remapped to new rule codes:

Stabilization

The following rules have been stabilized and are no longer in preview:

... (truncated)

Commits
  • 244b923 Add necessary permissions for cargo-dist Docker build (#12072)
  • a8b48fc Release v0.5.0 (#12068)
  • 04c8597 [flake8-simplify] Stabilize detection of Yoda conditions for "constant" col...
  • 4029a25 [Ruff v0.5] Stabilise 15 pylint rules (#12051)
  • 0917ce1 Update documentation to mention etcetera crate instead of dirs for user c...
  • 22cebdf Add server config to filter out syntax error diagnostics (#12059)
  • 72b6c26 Simplify LinterResult, avoid cloning ParseError (#11903)
  • 73851e7 Avoid displaying syntax error as log message (#11902)
  • e7b4969 Remove E999 as a rule, disallow any disablement methods for syntax error (#...
  • c98d8a0 [pyflakes] Stabilize detection of is comparisons to lists, etc. (F632) (#...
  • Additional commits viewable in compare view


Updates pytest from 8.2.1 to 8.2.2

Release notes

Sourced from pytest's releases.

8.2.2

pytest 8.2.2 (2024-06-04)

Bug Fixes

  • #12355: Fix possible catastrophic performance slowdown on a certain parametrization pattern involving many higher-scoped parameters.
  • #12367: Fix a regression in pytest 8.2.0 where unittest class instances (a fresh one is created for each test) were not released promptly on test teardown but only on session teardown.
  • #12381: Fix possible "Directory not empty" crashes arising from concurent cache dir (.pytest_cache) creation. Regressed in pytest 8.2.0.

Improved Documentation

  • #12290: Updated Sphinx theme to use Furo instead of Flask, enabling Dark mode theme.
  • #12356: Added a subsection to the documentation for debugging flaky tests to mention lack of thread safety in pytest as a possible source of flakyness.
  • #12363: The documentation webpages now links to a canonical version to reduce outdated documentation in search engine results.
Commits
  • 329d371 Prepare release version 8.2.2
  • 214d098 Merge pull request #12414 from bluetech/backport-12409
  • 153a436 [8.2.x] fixtures: fix catastrophic performance problem in reorder_items
  • b41d5a5 Merge pull request #12412 from pytest-dev/backport-12408-to-8.2.x
  • 9bb73d7 [8.2.x] cacheprovider: fix "Directory not empty" crash from cache directory c...
  • 4569a01 [8.2.x] doc: Update trainings/events (#12402)
  • 1d103e5 [8.2.x] Clarify pytest_ignore_collect docs (#12386)
  • 240a252 [8.2.x] Add html_baseurl to sphinx conf.py (#12372)
  • a5ee3c4 Merge pull request #12370 from pytest-dev/backport-12368-to-8.2.x
  • f7358ae [8.2.x] unittest: fix class instances no longer released on test teardown sin...
  • Additional commits viewable in compare view


Updates sphinx-book-theme from 1.1.2 to 1.1.3

Release notes

Sourced from sphinx-book-theme's releases.

v1.1.3

(full changelog)

Enhancements made

Bugs fixed

Maintenance and upkeep improvements

Documentation improvements

Other merged PRs

Contributors to this release

(GitHub contributors page for this release)

@​aawadaptix | @​afeld | @​agoose77 | @​choldgraf | @​dependabot | @​LecrisUT | @​sinsong | @​welcome

Changelog

Sourced from sphinx-book-theme's changelog.

Changelog

Commits
  • b0f7a35 Merge pull request #843 from executablebooks/agoose77/enh-bump-version
  • 21ead22 enh: bump version
  • c9ac6b1 Merge pull request #842 from executablebooks/agoose77/maint-bump-pydata-version
  • bd60e86 Merge pull request #809 from sinsong/master
  • 6e93460 maint: update pydata-sphinx-theme min version
  • 9939b7a Update src/sphinx_book_theme/assets/styles/sections/_header-article.scss
  • 36de725 Merge branch 'master' into master
  • 3b6fd68 Merge pull request #841 from executablebooks/agoose77/fix-pydata-sphinx-theme...
  • 2e53d46 docs: fix false-positive for nested admonitions
  • 0a84a3f ci: fix pattern
  • Additional commits viewable in compare view


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codecov[bot] commented 1 month ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 94.92%. Comparing base (beb139c) to head (3bcce50).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #97 +/- ## ======================================= Coverage 94.92% 94.92% ======================================= Files 17 17 Lines 650 650 ======================================= Hits 617 617 Misses 33 33 ``` | [Flag](https://app.codecov.io/gh/ssec-jhu/evolver-ng/pull/97/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=ssec-jhu) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/ssec-jhu/evolver-ng/pull/97/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=ssec-jhu) | `94.92% <ø> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=ssec-jhu#carryforward-flags-in-the-pull-request-comment) to find out more.

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