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sshen82 / BandNorm

Simple Normalization Method for single-cell Hi-C
GNU General Public License v3.0
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question in the text #8

Closed tarak77 closed 2 years ago

tarak77 commented 2 years ago

Hi Siqi, In the supplementary text you mention that genes longer than or equal to 100kb were utilized for scGAD score calculations. Is it true?

sshen82 commented 2 years ago

Hi Tarak, Yes, in the article we did that, but after submitting the article, we realize that it is actually not necessary. We can just use a procedure similar to Seurat: filter out genes / cells that have low counts.

Yours sincerely, Siqi Shen

tarak77 commented 2 years ago

ok got it