search

ssi-dk / bifrost

MIT License
6 stars 6 forks source link

reorder conda environment channels #16

Closed corburn closed 5 years ago

corburn commented 5 years ago

I suspect the bug cited in the install script is due to the conda channel order.

https://github.com/ssi-dk/bifrost/blob/ea4ce48b696370c61ad72c5d215a0bc0da0adc36/setup/install.sh#L4

https://github.com/ssi-dk/bifrost/blob/ea4ce48b696370c61ad72c5d215a0bc0da0adc36/envs/bifrost_for_install_full.yaml#L3-L6

I encountered a library issue before and it was because bioconda defers non-bio dependencies to the conda-forge channel. They depend on the following channel order:

channels:
  - bioconda
  - conda-forge
  - defaults

https://bioconda.github.io/user/install.html#set-up-channels

martinbaste commented 5 years ago

also fixed in 39908e465db4