Establish test data set which can be attached via mongo atlas

ssi-dk / bifrost

MIT License

6 stars 6 forks source link

Establish test data set which can be attached via mongo atlas #51

Closed kimleeng closed 4 years ago

kimleeng commented 4 years ago

Looking to set up easier testing with a small data set including localized development but sharable DB. Figured best bet for this is with mongo atlas so trying that out and getting it working. Also made a dataset available on ENA (PRJEB39131) to run this with randomized S. aureus and E. coli

kimleeng commented 4 years ago

Created git hub repository https://github.com/ssi-dk/bifrost_test_databifrost_test_data as the solution to this which includes scripts to download samples. More scripts need to be added