mpi still required for build

ssolo / ALE

Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamated as a combination of clades observed in a sample of gene trees. We implement the ALE approach in the context of a reconciliation model (cf. http://arxiv.org/abs/1211.4606 ), which allows for the duplication, transfer and loss of genes. We use ALE to efficiently approximate the sum of the joint likelihood over amalgamations and to find the reconciled gene tree that maximizes the joint likelihood among all such trees.

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mpi still required for build #22

Closed EricDeveaud closed 10 months ago

EricDeveaud commented 3 years ago

Hello,

commit https://github.com/ssolo/ALE/commit/f265cfb777d30f4d98cb154859df341f0b459415 removed openmpi dependent targets. but build still requires openmpi due to boost mpi find_package usage

changing find_package(Boost COMPONENTS mpi serialization REQUIRED) to find_package(Boost COMPONENTS serialization REQUIRED)

allows build to succed without openmpi.

regards

Eric

ssolo commented 10 months ago

This should be resolved, please verify.