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Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamated as a combination of clades observed in a sample of gene trees. We implement the ALE approach in the context of a reconciliation model (cf. http://arxiv.org/abs/1211.4606 ), which allows for the duplication, transfer and loss of genes. We use ALE to efficiently approximate the sum of the joint likelihood over amalgamations and to find the reconciled gene tree that maximizes the joint likelihood among all such trees.
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Error when compiling ALE #23

Closed 007goodmans closed 10 months ago

007goodmans commented 3 years ago

when i compile the ALE，there are some errors. I have try to rebuilt Bio++ many times, but it still comes out. Does anybody know how to solve this. QQ图片20210321191804

drenal commented 3 years ago

Hi, please try the latest commit with -DBUILD_STATIC=OFF cmake flag.

007goodmans commented 3 years ago

We have solved this problem, thank you very much for your help.