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ssolo / ALE

Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamated as a combination of clades observed in a sample of gene trees. We implement the ALE approach in the context of a reconciliation model (cf. http://arxiv.org/abs/1211.4606 ), which allows for the duplication, transfer and loss of genes. We use ALE to efficiently approximate the sum of the joint likelihood over amalgamations and to find the reconciled gene tree that maximizes the joint likelihood among all such trees.
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Update the docker version? #29

Closed michoug closed 10 months ago

michoug commented 2 years ago

Hi, Would it be possible to update the docker version to the last one? Thanks! Greg

drenal commented 2 years ago

Hi Greg, a new Dockerfile have been just pushed for BPP v2.4.1: https://github.com/ssolo/ALE/blob/master/etc/filesDockerImage/Dockerfile

michoug commented 2 years ago

Thanks!

michoug commented 2 years ago

Hi Would it be possible to put the image on docker hub to simplify its use? Thanks Greg

ssolo commented 10 months ago

Sorry, please ask @Boussau , I don't know docker.