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sstadick / perbase

Per-base per-nucleotide depth analysis
MIT License
117 stars 14 forks source link

Add bgzip output support #10

Closed sstadick closed 3 years ago

sstadick commented 4 years ago

and indexing?

nh13 commented 3 years ago

I second this request!

nh13 commented 3 years ago

For now, folks can just pipe the output into bgzip --index --index-name out.gz.csi > out.gz

sstadick commented 3 years ago

In progress: https://github.com/sstadick/perbase/pull/36

Just need to update the README and look into generating an index.

It's not the fastest possible bgzip support, but it's better than nothing and probably still faster than piping into bgzip tool.

sstadick commented 3 years ago

See https://github.com/sstadick/perbase/pull/38

Skipping index generation for now.