This adds support for taking a BCF/VCF file to specify the positions of
interest. It also allows a user to specify the max depth in order to
help control runtime in cases where there is very high coverage.
This also includes a bugfix to only-depth that was skipping records
that started on the stop of a region, or stopped on the start of a
region.
Lastly, this adds the full contig name to the logs for better debuging,
and clarifies when tid is output instead of the contig name
This adds support for taking a BCF/VCF file to specify the positions of interest. It also allows a user to specify the max depth in order to help control runtime in cases where there is very high coverage.
This also includes a bugfix to
only-depththat was skipping records that started on the stop of a region, or stopped on the start of a region.Lastly, this adds the full contig name to the logs for better debuging, and clarifies when tid is output instead of the contig name