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sstadick / perbase

Per-base per-nucleotide depth analysis
MIT License
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Allow for outputing positions with 0 depth in base-depth #44

Closed sstadick closed 2 years ago

sstadick commented 2 years ago

Currently base-depth starts/stops with the first/last read of a pileup. In some cases though it would still be preferable to pad the positions for the region of interest with 0s. add a keep-zeros options similar to this: https://github.com/sstadick/perbase/pull/43