Currently base-depth starts/stops with the first/last read of a pileup. In some cases though it would still be preferable to pad the positions for the region of interest with 0s. add a keep-zeros options similar to this: https://github.com/sstadick/perbase/pull/43
Currently base-depth starts/stops with the first/last read of a pileup. In some cases though it would still be preferable to pad the positions for the region of interest with 0s. add a
keep-zeros
options similar to this: https://github.com/sstadick/perbase/pull/43