Closed brentp closed 1 year ago
Any chance you have the benchmarks you ran on the PR are available to check on this one? I don't see any reason to suspect that this would slow things down, just being cautious since I haven't touched this code in a long time.
Sorry for the delay. I just built a release for main and my branch and ran a few times
time ./perbase-main base-depth $bam | md5sum
time ./perbase-bsp base-depth $bam | md5sum
and the times are nearly identical.
See release v0.9.0 which should land on crates.io shortly.
And thanks for the PR!
Thanks Seth!
see #60
This seems to be the smallest change and makes it possible for
only_depth
to work with minimal changes since that doesn't actually use the htslib pileup stuff.