sstadick / perbase

Per-base per-nucleotide depth analysis
MIT License
117 stars 14 forks source link

bgzipped and indexed reference fasta #70

Open darked89 opened 9 months ago

darked89 commented 9 months ago

Hello,

First things first: thank you so much for creating a very useful tool.

Modest enhancement proposal:

genomic fasta files are fairly big, so I tend to keep them compressed whenever possible. Wold it be possible to modify perbase so it will be able to read bgzipped and indexed (samtools faidix) genome.fa.gz files as reference?

Darek Kedra