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sstober / openmiir

a public domain dataset of EEG recordings for music imagery information retrieval
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Generating / downloading OpenMIIR-Perception-512Hz.pklz #3

Open sophiakene opened 4 months ago

sophiakene commented 4 months ago

Hello,

I think due to version compability issues, I am not able to run the first notebook 1 RAW Dataset Preparation 512Hz.ipynb an therefore cannot generate the file OpenMIIR-Perception-512Hz.pklz. In the readme it says that there is also a link (http://www.ling.uni-potsdam.de/mlcog/OpenMIIR/rl2016/data/) to download that file and the one generated by 2 Make HDF5 Dataset.ipynb but that link does not work. Would you mind providing another link with those two files?

Thank you

sstober commented 4 months ago

Hello,

Sorry for the hassle. Seems like there is a problem with the server in Potsdam. I have uploaded the files here for you: https://cloud.ovgu.de/s/QeAQLsb9HEA4GE2

Cheers, Sebastian

On 12. Feb 2024, at 13:51, sophiakene @.***> wrote:

Hello,

I think due to version compability issues, I am not able to run the first notebook 1 RAW Dataset Preparation 512Hz.ipynb an therefore cannot generate the file OpenMIIR-Perception-512Hz.pklz. In the readme it says that there is also a link (http://www.ling.uni-potsdam.de/mlcog/OpenMIIR/rl2016/data/) to download that file and the one generated by 2 Make HDF5 Dataset.ipynb but that link does not work. Would you mind providing another link with those two files?

Thank you

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sophiakene commented 4 months ago

Hi Sebastian, Thanks a lot for the fast answer and for sending me the files! I hope that it is okay that I am asking something else:Do you happen to have requirements.txt files for the OpenMIIR and OpenMIIR-rl-2016 projects? Unfortunately, I cannot run most of the code because of version incompability and other unforeseen errors. Specifically, the notebooks openmiir/eeg/preprocessing/notebooks/Subject P{SubjID}.ipynb to preprocess the raw EEG data, and the machine learning notebooks openmiir-rl-2016/Train OpenMIIR baseline ch_mean RAW.ipynb etc. If not, do you have any other recommendations what I could do to make the code run? In case you are wondering, I am working with this dataset in the scope of my master's thesis. I might end up recording more data with the protocol provided in OpenMIIR. Please let me know if you would be interested in that data to augment the dataset as it says on github (though I realize that this has been written a couple of years ago) and/or my results.

Thanks again for your helpBest,Sophia

Am Montag, 12. Februar 2024 um 20:30:37 MEZ hat Sebastian Stober ***@***.***> Folgendes geschrieben:

Hello,

Sorry for the hassle. Seems like there is a problem with the server in Potsdam. I have uploaded the files here for you: https://cloud.ovgu.de/s/QeAQLsb9HEA4GE2

Cheers, Sebastian

On 12. Feb 2024, at 13:51, sophiakene @.***> wrote:

Hello,

I think due to version compability issues, I am not able to run the first notebook 1 RAW Dataset Preparation 512Hz.ipynb an therefore cannot generate the file OpenMIIR-Perception-512Hz.pklz. In the readme it says that there is also a link (http://www.ling.uni-potsdam.de/mlcog/OpenMIIR/rl2016/data/) to download that file and the one generated by 2 Make HDF5 Dataset.ipynb but that link does not work. Would you mind providing another link with those two files?

Thank you

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you are subscribed to this thread.

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: @.***>

sstober commented 4 months ago

Hi Sophia,

I’m afraid the code is very old - still using Python 2.7. The lib that probably causes the problem is most likely mne because it has evolved quite a bit in the meantime. The version I used was something around 0.9 which also matches the time the dataset was created as listed here https://mne.tools/stable/development/whats_new.html

I think it would be a good idea to port the preprocessing to the latest mne version and also to Python 3. The thing that is most essential is the basic event processing because it makes sure you have the markers with the right values in the right places. Everything else is optional anyways.

Unfortunately, I do not have the time to do this myself as I am running a lab myself now and hardly have time to code. But I can offer assistance. I’d suggest you contact me at @.*** via email as this GitHub issue does not seem to be the right format for this discussion.

Cheers, Sebastian

On 13. Feb 2024, at 12:50, sophiakene @.***> wrote:

Hi Sebastian, Thanks a lot for the fast answer and for sending me the files! I hope that it is okay that I am asking something else:Do you happen to have requirements.txt files for the OpenMIIR and OpenMIIR-rl-2016 projects? Unfortunately, I cannot run most of the code because of version incompability and other unforeseen errors. Specifically, the notebooks openmiir/eeg/preprocessing/notebooks/Subject P{SubjID}.ipynb to preprocess the raw EEG data, and the machine learning notebooks openmiir-rl-2016/Train OpenMIIR baseline ch_mean RAW.ipynb etc. If not, do you have any other recommendations what I could do to make the code run? In case you are wondering, I am working with this dataset in the scope of my master's thesis. I might end up recording more data with the protocol provided in OpenMIIR. Please let me know if you would be interested in that data to augment the dataset as it says on github (though I realize that this has been written a couple of years ago) and/or my results.

Thanks again for your helpBest,Sophia

Am Montag, 12. Februar 2024 um 20:30:37 MEZ hat Sebastian Stober @.***> Folgendes geschrieben:

Hello,

Sorry for the hassle. Seems like there is a problem with the server in Potsdam. I have uploaded the files here for you: https://cloud.ovgu.de/s/QeAQLsb9HEA4GE2

Cheers, Sebastian

On 12. Feb 2024, at 13:51, sophiakene @.***> wrote:

Hello,

I think due to version compability issues, I am not able to run the first notebook 1 RAW Dataset Preparation 512Hz.ipynb an therefore cannot generate the file OpenMIIR-Perception-512Hz.pklz. In the readme it says that there is also a link (http://www.ling.uni-potsdam.de/mlcog/OpenMIIR/rl2016/data/) to download that file and the one generated by 2 Make HDF5 Dataset.ipynb but that link does not work. Would you mind providing another link with those two files?

Thank you

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you are subscribed to this thread.

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: @.***> — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.