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stajichlab / AAFTF

Automatic Assembly For The Fungi
MIT License
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Add GC% in 'assess' command #10

Closed hyphaltip closed 3 years ago

hyphaltip commented 3 years ago

add a row specifying mean or median GC% for genome

hyphaltip commented 3 years ago

Solved per bed05a619c9657a87cd32cbfc1ad7023b18a316d and report a GC% in assess report.

Eg

   CONTIG COUNT  =  2233
   TOTAL LENGTH  =  43540719
            MIN  =  1000
            MAX  =  156599
         MEDIAN  =  11424
           MEAN  =  19498.75
            L50  =  377
            N50  =  38991
            L90  =  1145
            N90  =  10823
            GC%  =  39.12