I had no issues running each step of the pipeline independently, but when I tried to run AAFTF in pipeline mode it always failed at the vecscreen step. Turns out there is just a simply typo on line 137 in the pipeline.py script. Can you remove the space?
# please change
if not checkfile(basename + ' .vecscreen.fasta'):
# to
if not checkfile(basename + '.vecscreen.fasta'):
I had no issues running each step of the pipeline independently, but when I tried to run AAFTF in pipeline mode it always failed at the vecscreen step. Turns out there is just a simply typo on line 137 in the
pipeline.py
script. Can you remove the space?