srobb1
commented
10 years ago Hi Austin,
I added your sample config file. I am glad this is useful to you. Thanks for using it and supplying an example file.
sofia
On Fri, Jul 18, 2014 at 2:36 PM, Austin Richardson <notifications@github.com
wrote:
It would be useful to have an example config file.
Here's the config file I used to run your fork of OrthoMCL.
The login and password fields are only there because OrthoMCL will complain otherwise.
dbVendor=sqlite dbConnectString=DBI:SQLite:orthomcl dbLogin=my_db_login dbPassword=my_db_password similarSequencesTable=SimilarSequences orthologTable=Ortholog inParalogTable=InParalog coOrthologTable=CoOrtholog interTaxonMatchView=InterTaxonMatch evalueExponentCutoff=-2 percentMatchCutoff=20
P.S. Thanks for putting this up! I was having trouble configuring MySQL and thought, "why not just use sqlite?" I Googled it and to my surprise/delight, someone had done the work already.
— Reply to this email directly or view it on GitHub https://github.com/stajichlab/OrthoMCL/issues/1.
It would be useful to have an example config file.
Here's the config file I used to run your fork of OrthoMCL.
The login and password fields are only there because OrthoMCL will complain otherwise.
P.S. Thanks for putting this up! I was having trouble configuring MySQL and thought, "why not just use sqlite?" I Googled it and to my surprise/delight, someone had done the work already.