stamatak
commented
7 years ago Thanks for pointing this ou, the git-master is stable enough, I'll make a new tagged release soon,
alexis
On 08.03.2017 14:51, Iakov Davydov wrote:
Hi, I'm having the issue with RAxML 8.2.9 (the latest stable version I assume). I run the following code:
|~/raxml/standard-RAxML-8.2.9/raxmlHPC-AVX -m GTRGAMMA -s 833.flt.fasta -n tree -N 20 -p 1 |
on the moderately small dataset. And I get the following problem:
|Inference[0]: Time 0.061822 GAMMA-based likelihood -404.902950, best rearrangement setting 5 Inference[1]: Time 0.043446 GAMMA-based likelihood -404.906780, best rearrangement setting 5 Inference[2]: Time 0.053795 GAMMA-based likelihood -404.912474, best rearrangement setting 5 Inference[3]: Time 0.042010 GAMMA-based likelihood -404.904657, best rearrangement setting 5 Inference[4]: Time 0.033845 GAMMA-based likelihood -404.905038, best rearrangement setting 5 Inference[5]: Time 0.050149 GAMMA-based likelihood -405.409797, best rearrangement setting 5 Inference[6]: Time 0.049108 GAMMA-based likelihood -404.922288, best rearrangement setting 5 Inference[7]: Time 0.034839 GAMMA-based likelihood -404.903627, best rearrangement setting 5 Inference[8]: Time 0.035779 GAMMA-based likelihood -404.905431, best rearrangement setting 5 Inference[9]: Time 0.034291 GAMMA-based likelihood -404.905282, best rearrangement setting 5 Inference[10]: Time 0.050510 GAMMA-based likelihood -404.942362, best rearrangement setting 5 Inference[11]: Time 0.061640 GAMMA-based likelihood -404.905881, best rearrangement setting 5 Inference[12]: Time 0.064153 GAMMA-based likelihood -404.904110, best rearrangement setting 5 Inference[13]: Time 0.049692 GAMMA-based likelihood -404.903790, best rearrangement setting 5 raxmlHPC-AVX: optimizeModel.c:123: setRateModel: Assertion `rate >= 0.0001 && rate <= 1000000.0' failed. Aborted (core dumped) |
Interestingly, this is not reproduced in the latest git version. Is the git-master stable enough to use it? If so, could you please make a release?
Thanks, Iakov
File: 833.flt.fasta.txt https://github.com/stamatak/standard-RAxML/files/827761/833.flt.fasta.txt
Platform: Ubuntu Linux 16.04.2 LTS, 64bit
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-- Alexandros (Alexis) Stamatakis
Research Group Leader, Heidelberg Institute for Theoretical Studies Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology Adjunct Professor, Dept. of Ecology and Evolutionary Biology, University of Arizona at Tucson
www.exelixis-lab.org
Hi, I'm having the issue with RAxML 8.2.9 (the latest stable version I assume). I run the following code:
on the moderately small dataset. And I get the following problem:
Interestingly, this is not reproduced in the latest git version. Is the git-master stable enough to use it? If so, could you please make a release?
Thanks, Iakov
File: 833.flt.fasta.txt
Platform: Ubuntu Linux 16.04.2 LTS, 64bit