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stamatak / standard-RAxML

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How to set the model parameter for GTR+F+I? #48

Closed liufuyan2016 closed 4 years ago

liufuyan2016 commented 4 years ago

I use IQ-TREE for model test, and the optional model is GTR +F+I. Could you help me how to set the model in RaxML.

stamatak commented 4 years ago

A couple of things:

  1. Please read the RAxML manual at: https://cme.h-its.org/exelixis/resource/download/NewManual.pdf
  2. Please use the RAxML google group for such questions
  3. Please upgrade to RAxML-NG: https://github.com/amkozlov/raxml-ng
liufuyan2016 commented 4 years ago

Thanks. In my opinion, I should use GTRCATXI . This is right?