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CmdStanR: the R interface to CmdStan
https://mc-stan.org/cmdstanr/
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CmdStanR 0.5.2 + R4.2 + W11: CmdStan installation error #653

Closed ma-riviere closed 6 months ago

ma-riviere commented 2 years ago

Describe the bug Installing CmdStan from CmdStanR 0.5.2 with R4.2 on Windows 11 fails.

To Reproduce

Create a new project and run:

cmdstanr::check_cmdstan_toolchain(fix = TRUE)
cmdstanr::install_cmdstan()

Console output in R Studio:

The C++ toolchain required for CmdStan is setup properly!
* Latest CmdStan release is v2.29.2
* Installing CmdStan v2.29.2 in E:/Documents/.cmdstan/cmdstan-2.29.2
* Downloading cmdstan-2.29.2.tar.gz from GitHub...
* Download complete
* Unpacking archive...
Warning: cannot open file 'E:/Documents/.cmdstan/cmdstan-2.29.2/make/local': No such file or directory

If I look at the directory structure of the unpacked archive (from the install attempt), the issue seems to be that 'cmdstan-2.29.2' is repeated twice in the path: the content of CmdStan is located at ‘E:/Documents/.cmdstan/cmdstan-2.29.2/cmdstan-2.29.2/’, which would explain why the make/local is not found since it assumes 'cmdstan-2.29.2' only exists once in the path.

Operating system Windows 11

CmdStanR version number 0.5.2

Additional context I do not think this issue is W11 specific since I always had issues installing CmdStan using CmdStanR (even when still on W10). Not sure it was exactly the same issue I had back then though, but I think it was.

ma-riviere commented 2 years ago

Changing the exdir argument of untar in install.R to dir instead of dir_cmdstan works:

untar_rc <- utils::untar(
    dest_file,
    exdir = dir, # instead of dir_cmdstan
    extras = "--strip-components 1"
  )

But I'm guessing this is not "normal" behavior, so maybe it has to do with Windows 11 in the end ? Seems weird that nobody else would have raised that issue before ... Maybe it's related to the extras = "--strip-components 1" ? (wild guess, I have no idea what that argument does)

nspindel commented 2 years ago

I am also having trouble installing CmdStan from CmdStanR 0.5.2 with R4.2 on Windows 11. I've tried the following in a fresh R session in RStudio (2022.02.2 Build 485): install.packages("cmdstanr", repos = c("https://mc-stan.org/r-packages/", getOption("repos")))

Console output in RStudio: `Installing package into ‘C:/Users/foobar/AppData/Local/R/win-library/4.2’ (as ‘lib’ is unspecified) trying URL 'https://mc-stan.org/r-packages/bin/windows/contrib/4.2/cmdstanr_0.5.2.zip' Content type 'application/zip' length 1101367 bytes (1.1 MB) downloaded 1.1 MB

package ‘cmdstanr’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in C:\Users\foobar\AppData\Local\Temp\RtmpewZjCh\downloaded_packages`

Then I ran: library(cmdstanr)

Console output: `This is cmdstanr version 0.5.2

Then I ran: check_cmdstan_toolchain(fix = TRUE, quiet = TRUE)

Console ouput error: Error in processx::run("pacman", args = c("-Sy", install_pkgs, "--noconfirm"), : System command 'pacman' failed, exit status: 1, stderr: E> error: failed to synchronize all databases (unable to lock database)

Then I ran a stack trace: .Last.error.trace

Console output: `Stack trace:

  1. cmdstanr:::check_cmdstan_toolchain(fix = TRUE, quiet = TRUE)
  2. cmdstanr:::check_rtools4x_windows_toolchain(fix = fix, quiet = quiet)
  3. cmdstanr:::install_toolchain(quiet = quiet)
  4. withr::with_path(c(toolchain_PATH_env_var()), processx::run("pacman", ...
  5. base:::force(code)
  6. processx::run("pacman", args = c("-Sy", install_pkgs, "--noconfirm"), ...

  7. throw(new_process_error(res, call = sys.call(), echo = echo, ...

    x System command 'pacman' failed, exit status: 1, stderr: E> error: failed to synchronize all databases (unable to lock database) `

Something is clearly wrong with my C++ toolchain, but I'm having a hard time tracking it down. Is there an easy fix for this issue? I've used previous versions of cmdstanr without encountering this error.

rok-cesnovar commented 2 years ago

Thank you both. We have yet to test on Windows 11 so apologize for the issues.

@nspindel just to confirm, do you have Rtools42 installed?

nspindel commented 2 years ago

No worries, thank you for responding so quickly!

@rok-cesnovar yes, I have Rtools42 installed. Moreover, I am running R version 4.2.0 Patched (2022-05-15 r82368 ucrt) -- "Vigorous Calisthenics". Platform: x86_64-w64-mingw32/x64 (64-bit)

ma-riviere commented 2 years ago

@nspindel

Might be that your issue is related to the "patched" aspect of your R version? Mine is R version 4.2.0 (2022-04-22 ucrt), and I had no issues with the C++ toolchain.

nspindel commented 2 years ago

@ma-riviere

Actually, I tried using that R version but it caused problems with loading other packages like Matrix, readxl, etc. When I switched to the patched version, those issues were gone.

smingerson commented 2 years ago

I believe I am running into the same issue, except on Windows 10, R 4.2 (2022-04-22 ucrt). Navigating to the installation directory, I see that the path is D:\Documents\.cmdstan\cmdstan-2.29.2\cmdstan-2.29.2\.

I believe it is related to extras = "--strip-components 1", as supposed above by @ma-riviere. That is intended to strip away X=1 components from the paths in the archive. Since everything in the archive is in the cmdstan-2.29.2 directory, we would expect that portion of the path to be eliminated, thus ending up with a single cmdstan-2.29.2 in the path above (the other one being added in cmdstanr::install_cmdstan().

cmdstanr::install_cmdstan(cores = 4, overwrite = TRUE)
The C++ toolchain required for CmdStan is setup properly!
* Latest CmdStan release is v2.29.2
* Installing CmdStan v2.29.2 in D:/Documents/.cmdstan/cmdstan-2.29.2
* Downloading cmdstan-2.29.2.tar.gz from GitHub...
* Removing the existing installation of CmdStan...
* Download complete
* Unpacking archive...
Error in mydir.create(name) : 
  failed to create directory ‘cmdstan-2.29.2/stan/lib/stan_math/lib/boost_1.75.0/tools/auto_index/doc/html/boost_autoindex/tut/con’
In addition: Warning message:
In dir.create(path, showWarnings = TRUE, recursive = TRUE, ...) :
  cannot create dir 'cmdstan-2.29.2\stan\lib\stan_math\lib\boost_1.75.0\tools\auto_index\doc\html\boost_autoindex\tut\con', reason 'Invalid argument'
ma-riviere commented 2 years ago

@smingerson

I remember having that issue on Windows 10 too, and IIRC it's due to "con" being a protected keyword (or something along those lines), making the extraction fail due to Windows refusing to create a folder with that name. I wonder if this issue is somehow related to the double "cmdstan-2.29.2" directory issue ? I.e. it fails to properly finish the extraction and thus never gets to the "stripping" part. And if they are indeed related, why am I getting a similar "stripping" issue when the extraction process is successful in my case ?

sajamac commented 2 years ago

I am also having trouble of installing CmdStan: I stalled cmdstanr first and I was told that I also needed to compile the libraries with the following command: cmdstanr::install_cmdstan().

But I have the following error message: Rtools42 installation found but the toolchain was not installed. Run check_cmdstan_toolchain(fix = TRUE) to fix the issue.

So I ran

check_cmdstan_toolchain(fix = TRUE, quiet = TRUE)

But I still have "Error in check_cmdstan_toolchain(fix = TRUE, quiet = TRUE) : could not find function "check_cmdstan_toolchain".

Any suggestion? I have R4.2+ W11 and Rtool4.2.

Thanks in advance.

rok-cesnovar commented 2 years ago

You probably didnt run library(cmdstanr) before running that function. You can run either:

library(cmdstanr)
check_cmdstan_toolchain(fix = TRUE)

or 

cmdstanr::check_cmdstan_toolchain(fix = TRUE)
sajamac commented 2 years ago

It worked! Thank you.

rok-cesnovar commented 2 years ago

@ma-riviere was this resolved or are you still experiencing this issue with CmdStan 2.30?

ma-riviere commented 2 years ago

@rok-cesnovar Unfortunately, no. The issue remains the same:

> cmdstanr::install_cmdstan()

The C++ toolchain required for CmdStan is setup properly!
* Latest CmdStan release is v2.30.0
* Installing CmdStan v2.30.0 in E:/Documents/.cmdstan/cmdstan-2.30.0
* Downloading cmdstan-2.30.0.tar.gz from GitHub...
* Download complete
* Unpacking archive...
Error in `file()`:
! cannot open the connection
Run `rlang::last_error()` to see where the error occurred.
Warning message:
In file(file, ifelse(append, "a", "w")) :
  cannot open file 'E:/Documents/.cmdstan/cmdstan-2.30.0/make/local': No such file or directory

CmdStan got installed in E:\Documents\.cmdstan\cmdstan-2.30.0\cmdstan-2.30.0\

sajamac commented 2 years ago

It has been resolved. Thank you.

From: Rok Češnovar @.> Sent: Saturday, July 9, 2022 5:12 AM To: stan-dev/cmdstanr @.> Cc: sang-sub lee @.>; Comment @.> Subject: Re: [stan-dev/cmdstanr] CmdStanR 0.5.2 + R4.2 + W11: CmdStan installation error (Issue #653)

@ma-rivierehttps://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fma-riviere&data=05%7C01%7Cslee193%40jhu.edu%7C32c87ca62bc140511ed208da618b05ae%7C9fa4f438b1e6473b803f86f8aedf0dec%7C0%7C0%7C637929546997394155%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=ccxSxph%2FY8KajY2Zyw%2FAsNZ4cWaiYEjYAC5Y9d9QTkM%3D&reserved=0 was this resolved or are you still experiencing this issue with CmdStan 2.30?

- Reply to this email directly, view it on GitHubhttps://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fstan-dev%2Fcmdstanr%2Fissues%2F653%23issuecomment-1179510724&data=05%7C01%7Cslee193%40jhu.edu%7C32c87ca62bc140511ed208da618b05ae%7C9fa4f438b1e6473b803f86f8aedf0dec%7C0%7C0%7C637929546997394155%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=5oc9brc6usZE9Kn7U7p%2FFnaJFcVFB9SWIJ0JYOFGAQM%3D&reserved=0, or unsubscribehttps://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FAJP5UPC7PJFV7NOMK5E2B33VTE64LANCNFSM5V33EDSQ&data=05%7C01%7Cslee193%40jhu.edu%7C32c87ca62bc140511ed208da618b05ae%7C9fa4f438b1e6473b803f86f8aedf0dec%7C0%7C0%7C637929546997394155%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=QyWawNMB0Yg5L55USW2vLHDpg%2BUYXwa2ZIbSuDfinno%3D&reserved=0. You are receiving this because you commented.Message ID: @.**@.>>

rok-cesnovar commented 2 years ago

@ma-riviere can you try installing a branch:

remotes::install_github("stan-dev/cmdstanr@fix-install-win11")

and see if that fixes it? It's a bit of a stab in the dark attempt of a fix though.

I recently installed Win11 on my old laptop and was unable to reproduce it.

ma-riviere commented 2 years ago

Didn't work, unfortunately :/

> cmdstanr::install_cmdstan()

The C++ toolchain required for CmdStan is setup properly!
* Latest CmdStan release is v2.30.0
* Installing CmdStan v2.30.0 in E:/Documents/.cmdstan/cmdstan-2.30.0
* Downloading cmdstan-2.30.0.tar.gz from GitHub...
* Download complete
* Unpacking archive...
Error in `file()`:
! cannot open the connection
Run `rlang::last_error()` to see where the error occurred.
Warning message:
In file(file, ifelse(append, "a", "w")) :
  cannot open file 'E:/Documents/.cmdstan/cmdstan-2.30.0/make/local': No such file or directory

> packageVersion("cmdstanr")
[1] ‘0.5.2.1’

I recently installed Win11 on my old laptop and was unable to reproduce it.

This is strange, I don't recall doing anything to my Win install that could explain that issue ... If it helps, I'm on Windows 11 Pro version 21H2 (build 22000.739). My W11 install is "standard" (i.e. no Beta or Dev channel)., updated from W10 and then reinstalled from scratch (to have a cleaner install).

I have temporarily solved the issue by changing the exdir argument of untar (in install.R of cmdstanr's code) to dir instead of dir_cmdstan :

untar_rc <- utils::untar(
    dest_file,
    exdir = dir, # instead of dir_cmdstan
    extras = "--strip-components 1"
  )

But this is probably not the way to go since it only works on Windows for me (i.e. using the same change on WSL makes it fail the install). So, for now, I use that change on Windows, and the unmodified cmdstanr releases on WSL.

rok-cesnovar commented 2 years ago

Thanks for all the details. When you have the chance, can you run: Sys.which("tar.exe")

ma-riviere commented 2 years ago

@rok-cesnovar: Thanks for your help in trying to solve this.

Sys.which("tar.exe")

"C:\WINDOWS\SYSTEM32\tar.exe"

I ran wmic datafile where name="C:\\Windows\\System32\\tar.exe" get Version /value in the terminal:

Version=3.5.1.0

PS: Since I mostly use Stan through WSL, this isn't really a pressing problem for me --> if this issue is specific to me (as it appears to be), just shelve it 🤷🏻. I'm pretty sure you have more important things to work on 😄

rok-cesnovar commented 2 years ago

The path looks good, the same as in my case. I labeled the issue as "more info needed" and will give it a lower priority. Still curious though.

CLRafaelR commented 2 years ago

@ma-riviere

I am unsure whether the following information resolves your issue, but I did the following steps when I successfully installed CmdStan on Windows 10 using R 4.2.0 and Rtools42. Especially setting PATH to Rtools42 manually has already solved another installation error on Windows (See #699 ).

Set PATH to Rtools42 manually

Although the official Rtools42 documentation says '[w]hen using R installed by the installer, no further setup is necessary after installing Rtools42 to build R packages from source', I personally think that it is safer to set PATH to Rtools 42 by adding C:\rtools42\x86_64-w64-mingw32.static.posix\bin, C:\rtools42\usr\bin, C:\rtools42\mingw64\bin, and C:\rtools42\ucrt64\bin to Environment Variables of Windows (See https://www.hanss.info/sebastian/post/rtools-path/ for how to edit Environment Variables).

After you set these four paths and then (re)start R, you would see the paths when you run the command below on R:

Sys.getenv("PATH")

Run several commands on Rtools42 in admin mode to get a fresh version of make (package building tool)

As you can see from a part of a thread on the installation of cmdstanr, you may need to run pacman -Sy mingw-w64-ucrt-x86_64-make mingw-w64-ucrt-x86_64-gcc in Rtools 42 bash.

To run the command above, I ran the following commands on Rtools 42 bash in admin mode. You will need to do these steps before I ran cmdstanr::install_cmdstan() on R:

## Remove package cash
rm -rf /var/cache/pacman/pkg/*

## Reset packman key
rm -r /etc/pacman.d/gnupg/
pacman-key --init
pacman-key --populate msys2

## Update keyring package
pacman -S msys2-keyring

## Update other packages
pacman -Syyu

pacman -Sy mingw-w64-ucrt-x86_64-make mingw-w64-ucrt-x86_64-gcc
pacman -Syu mingw-w64-x86_64-make
jonathan-g commented 2 years ago

I've followed the advice in @CLRafaelR's comment above and still get an error installing cmdstanr on one of my Windows 10 computers. On all my other computers, I have no problem.

> install_cmdstan(dir="C:/.cmdstan")
The C++ toolchain required for CmdStan is setup properly!
* Latest CmdStan release is v2.30.1
* Installing CmdStan v2.30.1 in C:/.cmdstan/cmdstan-2.30.1
* Downloading cmdstan-2.30.1.tar.gz from GitHub...
* Download complete
* Unpacking archive...
* Building CmdStan binaries...
INFO: Could not find files for the given pattern(s).
cp bin/windows-stanc bin/stanc.exe
 0 [main] mkdir (22848) C:\rtools42\usr\bin\mkdir.exe: *** fatal error - add_item ("\??\C:\rtools42", "/", ...) failed, errno 1
Stack trace:
Frame Function Args
000FFFFCD30 00180062AAE (00180299B8A, 00180274E41, 00800000000, 000FFFF8B30)
000FFFFCD30 0018004846A (00000000000, 000FFFFCD30, 00180020010, 000FFFFABDE)
000FFFFCD30 001800484A2 (000FFFF9BC0, 00000000001, 00800000000, 00000000001)
000FFFFCD30 001800ED047 (00000000000, 00040000024, 00000000000, 00000000000)
000FFFFCD30 00180132605 (001800DC2D4, 00000000000, 00000000000, 00000000000)
000FFFFCD30 00180048AB8 (00000000000, 00000000000, 00000000000, 00000000000)
000FFFFFFF0 00180047716 (00000000000, 00000000000, 00000000000, 00000000000)
000FFFFFFF0 001800477C4 (00000000000, 00000000000, 00000000000, 00000000000)
End of stack trace
mingw32-make: *** [stan/lib/stan_math/make/libraries:63: stan/lib/stan_math/lib/sundials_6.1.1/src/nvector/serial/nvector_serial.o] Error 256
mingw32-make: *** Waiting for unfinished jobs....
Warning message:
There was a problem during installation. See the error message(s) above. 
> check_cmdstan_toolchain()
The C++ toolchain required for CmdStan is setup properly!
> Sys.getenv("PATH")
[1] "C:\\Python38\\Scripts;C:\\Python38;C:\\rtools42\\x86_64-w64-mingw32.static.posix\\bin;C:\\rtools42\\usr\\bin;C:\\Program Files\\R\\R-4.2.1\\bin\\x64;C:\\Python38\\Scripts;C:\\Python38;C:\\Program Files (x86)\\Common Files\\Oracle\\Java\\javapath_target_5584812;C:\\Windows\\System32;C:\\Windows;C:\\Windows\\System32\\wbem;C:\\Windows\\System32\\WindowsPowerShell\\v1.0;C:\\Windows\\System32\\OpenSSH;C:\\Program Files\\PuTTY;C:\\Program Files\\Calibre2;D:\\program_files\\local\\SysinternalsSuite;C:\\Program Files\\NVIDIA Corporation\\NVIDIA NvDLISR;C:\\Program Files\\nodejs;C:\\ProgramData\\chocolatey\\bin;C:\\Program Files\\Microsoft VS Code\\bin;C:\\Program Files (x86)\\GnuPG\\bin;C:\\Program Files (x86)\\Pulse Secure\\VC142.CRT\\X64;C:\\Program Files (x86)\\Pulse Secure\\VC142.CRT\\X86;C:\\Program Files (x86)\\Intel\\Intel(R) Management Engine Components\\DAL;C:\\Program Files\\Intel\\Intel(R) Management Engine Components\\DAL;C:\\Program Files (x86)\\Bitvise SSH Client;C:\\Program Files\\TortoiseGit\\bin;C:\\Program Files\\dotnet;C:\\Program Files\\Pandoc;C:\\Program Files\\Git\\cmd;C:\\rtools42\\mingw64\\bin;C:\\rtools42\\ucrt64\\bin;C:\\Users\\gilligjm\\AppData\\Roaming\\TinyTeX\\bin\\win32;D:\\program_files\\MiKTeX 2.9\\miktex\\bin\\x64;D:\\Anaconda\\condabin;C:\\Program Files\\Java\\jre1.8.0_301\\bin;C:\\Users\\gilligjm\\AppData\\Roaming\\npm;D:\\program_files\\local\\qpdf\\bin;C:\\Users\\gilligjm\\AppData\\Local\\Microsoft\\WindowsApps;C:\\Users\\gilligjm\\AppData\\Local\\atom\\bin;C:\\Program Files\\RStudio\\bin\\quarto\\bin"
>
$ which g++
/c/rtools42/x86_64-w64-mingw32.static.posix/bin/g++

$ g++ --version
g++.exe (GCC) 10.3.0
Copyright (C) 2020 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

$ which mingw32-make
/c/rtools42/mingw64/bin/mingw32-make

$ mingw32-make --version
GNU Make 4.3
Built for Windows32
Copyright (C) 1988-2020 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
jonathan-g commented 2 years ago

I've followed the advice in @CLRafaelR's comment above and still get an error installing cmdstanr on one of my Windows 10 computers. On all my other computers, I have no problem.

Update: I could never get cmdstan to build under R on this machine, but opening a RTools42 Bash window (in user mode, not admin), going to the cmdstanr installation directory (in my case /c/.cmdstanr/cmdstan-2.30.1/ and typing mingw32-make build successfully built the cmdstanr executable and after that I was able to compile and run stan models from R (e.g., cmdstanr_example("schools_ncp")) without a problem.

danielinteractive commented 1 year ago

@rok-cesnovar So I tried to look at this issue now on my Windows computer at home - I also get an error. See the log below.

The system info:

> sessionInfo()
R version 4.2.2 (2022-10-31 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19045)

Matrix products: default

locale:
[1] LC_COLLATE=German_Switzerland.utf8  LC_CTYPE=German_Switzerland.utf8    LC_MONETARY=German_Switzerland.utf8 LC_NUMERIC=C                       
[5] LC_TIME=German_Switzerland.utf8    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] cmdstanr_0.5.3

loaded via a namespace (and not attached):
 [1] magrittr_2.0.3       munsell_0.5.0        colorspace_2.0-3     R6_2.5.1             rlang_1.0.6          fansi_1.0.3          tools_4.2.2         
 [8] grid_4.2.2           checkmate_2.1.0      gtable_0.3.1         utf8_1.2.2           cli_3.4.1            posterior_1.3.1      withr_2.5.0         
[15] abind_1.4-5          tibble_3.1.8         lifecycle_1.0.3      processx_3.8.0       tensorA_0.36.2       farver_2.1.1         ggplot2_3.4.0       
[22] ps_1.7.2             vctrs_0.5.0          glue_1.6.2           compiler_4.2.2       pillar_1.8.1         generics_0.1.3       scales_1.2.1        
[29] backports_1.4.1      distributional_0.3.1 jsonlite_1.8.3       pkgconfig_2.0.3

Log:

> install.packages("cmdstanr", repos = c("https://mc-stan.org/r-packages/", getOption("repos")))
Installiere Paket nach ‘C:/Users/danie/AppData/Local/R/win-library/4.2’
(da ‘lib’ nicht spezifiziert)
installiere auch Abhängigkeiten ‘colorspace’, ‘gtable’, ‘isoband’, ‘labeling’, ‘munsell’, ‘RColorBrewer’, ‘viridisLite’, ‘fansi’, ‘lifecycle’, ‘magrittr’, ‘pkgconfig’, ‘cli’, ‘glue’, ‘utf8’, ‘generics’, ‘numDeriv’, ‘ggplot2’, ‘scales’, ‘farver’, ‘digest’, ‘backports’, ‘abind’, ‘rlang’, ‘tibble’, ‘vctrs’, ‘tensorA’, ‘pillar’, ‘distributional’, ‘matrixStats’, ‘ps’, ‘checkmate’, ‘data.table’, ‘jsonlite’, ‘posterior’, ‘processx’, ‘R6’, ‘withr’

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/colorspace_2.0-3.zip'
Content type 'application/zip' length 2627174 bytes (2.5 MB)
downloaded 2.5 MB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/gtable_0.3.1.zip'
Content type 'application/zip' length 163789 bytes (159 KB)
downloaded 159 KB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/isoband_0.2.6.zip'
Content type 'application/zip' length 2180453 bytes (2.1 MB)
downloaded 2.1 MB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/labeling_0.4.2.zip'
Content type 'application/zip' length 62511 bytes (61 KB)
downloaded 61 KB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/munsell_0.5.0.zip'
Content type 'application/zip' length 244761 bytes (239 KB)
downloaded 239 KB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/RColorBrewer_1.1-3.zip'
Content type 'application/zip' length 55837 bytes (54 KB)
downloaded 54 KB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/viridisLite_0.4.1.zip'
Content type 'application/zip' length 1300037 bytes (1.2 MB)
downloaded 1.2 MB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/fansi_1.0.3.zip'
Content type 'application/zip' length 312229 bytes (304 KB)
downloaded 304 KB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/lifecycle_1.0.3.zip'
Content type 'application/zip' length 138937 bytes (135 KB)
downloaded 135 KB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/magrittr_2.0.3.zip'
Content type 'application/zip' length 227095 bytes (221 KB)
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Paket ‘colorspace’ erfolgreich ausgepackt und MD5 Summen abgeglichen
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Paket ‘matrixStats’ erfolgreich ausgepackt und MD5 Summen abgeglichen
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Die heruntergeladenen Binärpakete sind in 
    C:\Users\danie\AppData\Local\Temp\RtmpkHpgVU\downloaded_packages
> 
> 
> library(cmdstanr)
This is cmdstanr version 0.5.3
- CmdStanR documentation and vignettes: mc-stan.org/cmdstanr
- Use set_cmdstan_path() to set the path to CmdStan
- Use install_cmdstan() to install CmdStan
> cmdstanr::check_cmdstan_toolchain()
Error: 
Rtools42 installation found but the toolchain was not installed.
Run cmdstanr::check_cmdstan_toolchain(fix = TRUE) to fix the issue.
> cmdstanr::check_cmdstan_toolchain(fix = TRUE)
Installing mingw32-make and g++ with Rtools42.
The C++ toolchain required for CmdStan is setup properly!
> cmdstanr::install_cmdstan()
The C++ toolchain required for CmdStan is setup properly!
* Latest CmdStan release is v2.30.1
* Installing CmdStan v2.30.1 in C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1
* Downloading cmdstan-2.30.1.tar.gz from GitHub...
* Download complete
* Unpacking archive...
* Building CmdStan binaries...
INFORMATION: Es konnten keine Dateien mit dem angegebenen
Muster gefunden werden.
cp bin/windows-stanc bin/stanc.exe
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/nvector/serial/nvector_serial.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/nvector/serial/nvector_serial.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_math.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_math.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodea.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodea.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodea_io.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodea_io.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_bandpre.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_bandpre.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_bbdpre.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_bbdpre.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_diag.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_diag.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_direct.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_direct.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_io.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_io.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_ls.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_ls.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_sim.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_sim.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_stg.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_stg.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_stg1.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_stg1.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_spils.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_spils.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_band.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_band.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_context.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_context.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_dense.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_dense.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_direct.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_direct.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_futils.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_futils.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_iterative.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_iterative.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_linearsolver.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_linearsolver.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_matrix.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_matrix.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_memory.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_memory.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nonlinearsolver.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nonlinearsolver.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector_senswrapper.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector_senswrapper.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_version.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_version.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/band/sunmatrix_band.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/band/sunmatrix_band.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/dense/sunmatrix_dense.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/dense/sunmatrix_dense.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/band/sunlinsol_band.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/band/sunlinsol_band.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/dense/sunlinsol_dense.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/dense/sunlinsol_dense.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/newton/sunnonlinsol_newton.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/newton/sunnonlinsol_newton.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idaa.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idaa.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idaa_io.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idaa_io.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_bbdpre.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_bbdpre.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_direct.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_direct.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_ic.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_ic.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_io.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_io.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_ls.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_ls.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls_sim.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls_sim.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls_stg.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls_stg.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_spils.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_spils.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_bbdpre.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_bbdpre.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_direct.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_direct.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_io.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_io.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_ls.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_ls.o
g++ -pipe   -m64 -D_REENTRANT  -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT   -D_USE_MATH_DEFINES  -O3  -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_spils.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_spils.o
if ! [[ mingw32-make.exe =~ mingw32 ]]; then \
    echo "ERROR: Please use mingw32-make on Windows to build the Intel TBB library."; \
    echo "This is packaged with RTools, for example."; \
    exit 1; \
fi
touch stan/lib/stan_math/lib/tbb/tbb-make-check

--- Compiling the main object file. This might take up to a minute. ---

--- Compiling pre-compiled header. This might take a few seconds. ---
g++ -Wno-nonnull -std=c++1y -m64 -D_REENTRANT -Wall -Wno-unused-function -Wno-uninitialized -Wno-unused-but-set-variable -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-attributes -Wno-ignored-attributes      -I stan/lib/stan_math/lib/tbb_2020.3/include    -O3 -I src -I stan/src -I lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials  -D_USE_MATH_DEFINES  -DBOOST_DISABLE_ASSERTS          -c stan/src/stan/model/model_header.hpp -o stan/src/stan/model/model_header.hpp.gch
g++ -Wno-nonnull -std=c++1y -m64 -D_REENTRANT -Wall -Wno-unused-function -Wno-uninitialized -Wno-unused-but-set-variable -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-attributes -Wno-ignored-attributes      -I stan/lib/stan_math/lib/tbb_2020.3/include    -O3 -I src -I stan/src -I lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials  -D_USE_MATH_DEFINES  -DBOOST_DISABLE_ASSERTS          -c -o src/cmdstan/main.o src/cmdstan/main.cpp
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/multi_array/multi_array_ref.hpp:32,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/multi_array.hpp:34,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/algebra/multi_array_algebra.hpp:22,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint.hpp:63,
                 from stan/lib/stan_math/stan/math/prim/functor/ode_rk45.hpp:9,
                 from stan/lib/stan_math/stan/math/prim/functor/integrate_ode_rk45.hpp:6,
                 from stan/lib/stan_math/stan/math/prim/functor.hpp:14,
                 from stan/lib/stan_math/stan/math/prim.hpp:15,
                 from stan/src/stan/io/dump.hpp:7,
                 from src/cmdstan/command.hpp:30,
                 from src/cmdstan/main.cpp:1:
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:180:45: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  180 |         : public boost::functional::detail::unary_function<typename unary_traits<Predicate>::argument_type,bool>
      |                                             ^~~~~~~~~~~~~~
In file included from C:/rtools42/ucrt64/include/c++/12.2.0/string:48,
                 from C:/rtools42/ucrt64/include/c++/12.2.0/bits/locale_classes.h:40,
                 from C:/rtools42/ucrt64/include/c++/12.2.0/bits/ios_base.h:41,
                 from C:/rtools42/ucrt64/include/c++/12.2.0/streambuf:41,
                 from C:/rtools42/ucrt64/include/c++/12.2.0/bits/streambuf_iterator.h:35,
                 from C:/rtools42/ucrt64/include/c++/12.2.0/iterator:66,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/iterator/iterator_traits.hpp:10,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/range/iterator_range_core.hpp:26,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:30,
                 from stan/src/stan/callbacks/writer.hpp:4,
                 from src/cmdstan/arguments/argument.hpp:4,
                 from src/cmdstan/arguments/categorical_argument.hpp:4,
                 from src/cmdstan/arguments/arg_data.hpp:4,
                 from src/cmdstan/command.hpp:4:
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:214:45: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  214 |         : public boost::functional::detail::binary_function<
      |                                             ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:252:45: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  252 |         : public boost::functional::detail::unary_function<
      |                                             ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:299:45: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  299 |         : public boost::functional::detail::unary_function<
      |                                             ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:345:57: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  345 |     class mem_fun_t : public boost::functional::detail::unary_function<T*, S>
      |                                                         ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:361:58: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  361 |     class mem_fun1_t : public boost::functional::detail::binary_function<T*, A, S>
      |                                                          ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:377:63: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  377 |     class const_mem_fun_t : public boost::functional::detail::unary_function<const T*, S>
      |                                                               ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:393:64: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  393 |     class const_mem_fun1_t : public boost::functional::detail::binary_function<const T*, A, S>
      |                                                                ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:438:61: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  438 |     class mem_fun_ref_t : public boost::functional::detail::unary_function<T&, S>
      |                                                             ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:454:62: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  454 |     class mem_fun1_ref_t : public boost::functional::detail::binary_function<T&, A, S>
      |                                                              ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:470:67: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  470 |     class const_mem_fun_ref_t : public boost::functional::detail::unary_function<const T&, S>
      |                                                                   ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:487:68: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  487 |     class const_mem_fun1_ref_t : public boost::functional::detail::binary_function<const T&, A, S>
      |                                                                    ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:533:73: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  533 |     class pointer_to_unary_function : public boost::functional::detail::unary_function<Arg,Result>
      |                                                                         ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:557:74: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  557 |     class pointer_to_binary_function : public boost::functional::detail::binary_function<Arg1,Arg2,Result>
      |                                                                          ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/multi_array/multi_array_ref.hpp:32,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/multi_array.hpp:34,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/algebra/multi_array_algebra.hpp:22,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint.hpp:63,
                 from stan/lib/stan_math/stan/math/prim/functor/ode_rk45.hpp:9,
                 from stan/lib/stan_math/stan/math/prim/functor/integrate_ode_rk45.hpp:6,
                 from stan/lib/stan_math/stan/math/prim/functor.hpp:14,
                 from stan/lib/stan_math/stan/math/rev/fun.hpp:196,
                 from stan/lib/stan_math/stan/math/rev.hpp:10,
                 from stan/lib/stan_math/stan/math.hpp:19,
                 from stan/src/stan/model/model_header.hpp:4:
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:180:45: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  180 |         : public boost::functional::detail::unary_function<typename unary_traits<Predicate>::argument_type,bool>
      |                                             ^~~~~~~~~~~~~~
In file included from C:/rtools42/ucrt64/include/c++/12.2.0/string:48,
                 from C:/rtools42/ucrt64/include/c++/12.2.0/bits/locale_classes.h:40,
                 from C:/rtools42/ucrt64/include/c++/12.2.0/bits/ios_base.h:41,
                 from C:/rtools42/ucrt64/include/c++/12.2.0/ios:42,
                 from C:/rtools42/ucrt64/include/c++/12.2.0/istream:38,
                 from C:/rtools42/ucrt64/include/c++/12.2.0/sstream:38,
                 from C:/rtools42/ucrt64/include/c++/12.2.0/complex:45,
                 from stan/lib/stan_math/lib/eigen_3.3.9/Eigen/Core:96,
                 from stan/lib/stan_math/lib/eigen_3.3.9/Eigen/Dense:1,
                 from stan/lib/stan_math/stan/math/prim/fun/Eigen.hpp:22,
                 from stan/lib/stan_math/stan/math/rev.hpp:4:
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:214:45: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  214 |         : public boost::functional::detail::binary_function<
      |                                             ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:252:45: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  252 |         : public boost::functional::detail::unary_function<
      |                                             ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:299:45: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  299 |         : public boost::functional::detail::unary_function<
      |                                             ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:345:57: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  345 |     class mem_fun_t : public boost::functional::detail::unary_function<T*, S>
      |                                                         ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:361:58: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  361 |     class mem_fun1_t : public boost::functional::detail::binary_function<T*, A, S>
      |                                                          ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:377:63: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  377 |     class const_mem_fun_t : public boost::functional::detail::unary_function<const T*, S>
      |                                                               ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:393:64: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  393 |     class const_mem_fun1_t : public boost::functional::detail::binary_function<const T*, A, S>
      |                                                                ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:438:61: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  438 |     class mem_fun_ref_t : public boost::functional::detail::unary_function<T&, S>
      |                                                             ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:454:62: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  454 |     class mem_fun1_ref_t : public boost::functional::detail::binary_function<T&, A, S>
      |                                                              ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:470:67: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  470 |     class const_mem_fun_ref_t : public boost::functional::detail::unary_function<const T&, S>
      |                                                                   ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:487:68: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  487 |     class const_mem_fun1_ref_t : public boost::functional::detail::binary_function<const T&, A, S>
      |                                                                    ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:533:73: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  533 |     class pointer_to_unary_function : public boost::functional::detail::unary_function<Arg,Result>
      |                                                                         ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:557:74: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  557 |     class pointer_to_binary_function : public boost::functional::detail::binary_function<Arg1,Arg2,Result>
      |                                                                          ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
g++ -Wno-nonnull -std=c++1y -m64 -D_REENTRANT -Wall -Wno-unused-function -Wno-uninitialized -Wno-unused-but-set-variable -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-attributes -Wno-ignored-attributes      -I stan/lib/stan_math/lib/tbb_2020.3/include    -O3 -I src -I stan/src -I lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials  -D_USE_MATH_DEFINES  -DBOOST_DISABLE_ASSERTS          -c -fvisibility=hidden -o bin/cmdstan/stansummary.o  -static-libgcc -static-libstdc++      -Wl,-L,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb"   src/cmdstan/stansummary.cpp
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/multi_array/multi_array_ref.hpp:32,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/multi_array.hpp:34,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/algebra/multi_array_algebra.hpp:22,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint.hpp:63,
                 from stan/lib/stan_math/stan/math/prim/functor/ode_rk45.hpp:9,
                 from stan/lib/stan_math/stan/math/prim/functor/integrate_ode_rk45.hpp:6,
                 from stan/lib/stan_math/stan/math/prim/functor.hpp:14,
                 from stan/lib/stan_math/stan/math/prim.hpp:15,
                 from stan/src/stan/io/stan_csv_reader.hpp:5,
                 from stan/src/stan/mcmc/chains.hpp:4,
                 from src/cmdstan/stansummary_helper.hpp:4,
                 from src/cmdstan/stansummary.cpp:1:
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:180:45: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  180 |         : public boost::functional::detail::unary_function<typename unary_traits<Predicate>::argument_type,bool>
      |                                             ^~~~~~~~~~~~~~
In file included from C:/rtools42/ucrt64/include/c++/12.2.0/string:48,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/std/string_traits.hpp:15,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/std_containers_traits.hpp:19,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string.hpp:18,
                 from stan/src/stan/io/stan_csv_reader.hpp:4:
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:214:45: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  214 |         : public boost::functional::detail::binary_function<
      |                                             ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:252:45: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  252 |         : public boost::functional::detail::unary_function<
      |                                             ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:299:45: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  299 |         : public boost::functional::detail::unary_function<
      |                                             ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:345:57: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  345 |     class mem_fun_t : public boost::functional::detail::unary_function<T*, S>
      |                                                         ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:361:58: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  361 |     class mem_fun1_t : public boost::functional::detail::binary_function<T*, A, S>
      |                                                          ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:377:63: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  377 |     class const_mem_fun_t : public boost::functional::detail::unary_function<const T*, S>
      |                                                               ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:393:64: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  393 |     class const_mem_fun1_t : public boost::functional::detail::binary_function<const T*, A, S>
      |                                                                ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:438:61: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  438 |     class mem_fun_ref_t : public boost::functional::detail::unary_function<T&, S>
      |                                                             ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:454:62: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  454 |     class mem_fun1_ref_t : public boost::functional::detail::binary_function<T&, A, S>
      |                                                              ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:470:67: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  470 |     class const_mem_fun_ref_t : public boost::functional::detail::unary_function<const T&, S>
      |                                                                   ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:487:68: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  487 |     class const_mem_fun1_ref_t : public boost::functional::detail::binary_function<const T&, A, S>
      |                                                                    ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:533:73: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  533 |     class pointer_to_unary_function : public boost::functional::detail::unary_function<Arg,Result>
      |                                                                         ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:557:74: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  557 |     class pointer_to_binary_function : public boost::functional::detail::binary_function<Arg1,Arg2,Result>
      |                                                                          ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
g++ -Wno-nonnull -std=c++1y -m64 -D_REENTRANT -Wall -Wno-unused-function -Wno-uninitialized -Wno-unused-but-set-variable -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-attributes -Wno-ignored-attributes      -I stan/lib/stan_math/lib/tbb_2020.3/include    -O3 -I src -I stan/src -I lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials  -D_USE_MATH_DEFINES  -DBOOST_DISABLE_ASSERTS          -c -fvisibility=hidden -o bin/cmdstan/print.o  -static-libgcc -static-libstdc++      -Wl,-L,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb"   src/cmdstan/print.cpp
g++ -Wno-nonnull -std=c++1y -m64 -D_REENTRANT -Wall -Wno-unused-function -Wno-uninitialized -Wno-unused-but-set-variable -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-attributes -Wno-ignored-attributes      -I stan/lib/stan_math/lib/tbb_2020.3/include    -O3 -I src -I stan/src -I lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials  -D_USE_MATH_DEFINES  -DBOOST_DISABLE_ASSERTS          -c -fvisibility=hidden -o bin/cmdstan/diagnose.o  -static-libgcc -static-libstdc++      -Wl,-L,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb"   src/cmdstan/diagnose.cpp
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/multi_array/multi_array_ref.hpp:32,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/multi_array.hpp:34,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/algebra/multi_array_algebra.hpp:22,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint.hpp:63,
                 from stan/lib/stan_math/stan/math/prim/functor/ode_rk45.hpp:9,
                 from stan/lib/stan_math/stan/math/prim/functor/integrate_ode_rk45.hpp:6,
                 from stan/lib/stan_math/stan/math/prim/functor.hpp:14,
                 from stan/lib/stan_math/stan/math/prim.hpp:15,
                 from stan/src/stan/io/stan_csv_reader.hpp:5,
                 from stan/src/stan/mcmc/chains.hpp:4,
                 from src/cmdstan/stansummary_helper.hpp:4,
                 from src/cmdstan/print.cpp:2:
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:180:45: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  180 |         : public boost::functional::detail::unary_function<typename unary_traits<Predicate>::argument_type,bool>
      |                                             ^~~~~~~~~~~~~~
In file included from C:/rtools42/ucrt64/include/c++/12.2.0/string:48,
                 from C:/rtools42/ucrt64/include/c++/12.2.0/bits/locale_classes.h:40,
                 from C:/rtools42/ucrt64/include/c++/12.2.0/bits/ios_base.h:41,
                 from C:/rtools42/ucrt64/include/c++/12.2.0/ios:42,
                 from C:/rtools42/ucrt64/include/c++/12.2.0/ostream:38,
                 from C:/rtools42/ucrt64/include/c++/12.2.0/iostream:39,
                 from src/cmdstan/print_helper.hpp:4,
                 from src/cmdstan/print.cpp:1:
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:214:45: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  214 |         : public boost::functional::detail::binary_function<
      |                                             ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:252:45: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  252 |         : public boost::functional::detail::unary_function<
      |                                             ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:299:45: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  299 |         : public boost::functional::detail::unary_function<
      |                                             ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:345:57: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  345 |     class mem_fun_t : public boost::functional::detail::unary_function<T*, S>
      |                                                         ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:361:58: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  361 |     class mem_fun1_t : public boost::functional::detail::binary_function<T*, A, S>
      |                                                          ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:377:63: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  377 |     class const_mem_fun_t : public boost::functional::detail::unary_function<const T*, S>
      |                                                               ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:393:64: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  393 |     class const_mem_fun1_t : public boost::functional::detail::binary_function<const T*, A, S>
      |                                                                ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:438:61: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  438 |     class mem_fun_ref_t : public boost::functional::detail::unary_function<T&, S>
      |                                                             ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:454:62: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  454 |     class mem_fun1_ref_t : public boost::functional::detail::binary_function<T&, A, S>
      |                                                              ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:470:67: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  470 |     class const_mem_fun_ref_t : public boost::functional::detail::unary_function<const T&, S>
      |                                                                   ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:487:68: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  487 |     class const_mem_fun1_ref_t : public boost::functional::detail::binary_function<const T&, A, S>
      |                                                                    ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:533:73: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  533 |     class pointer_to_unary_function : public boost::functional::detail::unary_function<Arg,Result>
      |                                                                         ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:557:74: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  557 |     class pointer_to_binary_function : public boost::functional::detail::binary_function<Arg1,Arg2,Result>
      |                                                                          ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/multi_array/multi_array_ref.hpp:32,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/multi_array.hpp:34,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/algebra/multi_array_algebra.hpp:22,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint.hpp:63,
                 from stan/lib/stan_math/stan/math/prim/functor/ode_rk45.hpp:9,
                 from stan/lib/stan_math/stan/math/prim/functor/integrate_ode_rk45.hpp:6,
                 from stan/lib/stan_math/stan/math/prim/functor.hpp:14,
                 from stan/lib/stan_math/stan/math/prim.hpp:15,
                 from stan/src/stan/io/stan_csv_reader.hpp:5,
                 from stan/src/stan/mcmc/chains.hpp:4,
                 from src/cmdstan/stansummary_helper.hpp:4,
                 from src/cmdstan/diagnose.cpp:1:
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:180:45: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  180 |         : public boost::functional::detail::unary_function<typename unary_traits<Predicate>::argument_type,bool>
      |                                             ^~~~~~~~~~~~~~
In file included from C:/rtools42/ucrt64/include/c++/12.2.0/string:48,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/std/string_traits.hpp:15,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/std_containers_traits.hpp:19,
                 from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string.hpp:18,
                 from stan/src/stan/io/stan_csv_reader.hpp:4:
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:214:45: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  214 |         : public boost::functional::detail::binary_function<
      |                                             ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:252:45: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  252 |         : public boost::functional::detail::unary_function<
      |                                             ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:299:45: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  299 |         : public boost::functional::detail::unary_function<
      |                                             ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:345:57: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  345 |     class mem_fun_t : public boost::functional::detail::unary_function<T*, S>
      |                                                         ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:361:58: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  361 |     class mem_fun1_t : public boost::functional::detail::binary_function<T*, A, S>
      |                                                          ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:377:63: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  377 |     class const_mem_fun_t : public boost::functional::detail::unary_function<const T*, S>
      |                                                               ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:393:64: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  393 |     class const_mem_fun1_t : public boost::functional::detail::binary_function<const T*, A, S>
      |                                                                ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:438:61: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  438 |     class mem_fun_ref_t : public boost::functional::detail::unary_function<T&, S>
      |                                                             ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:454:62: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  454 |     class mem_fun1_ref_t : public boost::functional::detail::binary_function<T&, A, S>
      |                                                              ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:470:67: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  470 |     class const_mem_fun_ref_t : public boost::functional::detail::unary_function<const T&, S>
      |                                                                   ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:487:68: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  487 |     class const_mem_fun1_ref_t : public boost::functional::detail::binary_function<const T&, A, S>
      |                                                                    ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:533:73: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
  533 |     class pointer_to_unary_function : public boost::functional::detail::unary_function<Arg,Result>
      |                                                                         ^~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
stan/lib/stan_math/lib/boost_1.78.0/boost/functional.hpp:557:74: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  557 |     class pointer_to_binary_function : public boost::functional::detail::binary_function<Arg1,Arg2,Result>
      |                                                                          ^~~~~~~~~~~~~~~
C:/rtools42/ucrt64/include/c++/12.2.0/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
ar -rs stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_nvecserial.a stan/lib/stan_math/lib/sundials_6.1.1/src/nvector/serial/nvector_serial.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_math.o
ar: creating stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_nvecserial.a
ar -rs stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_cvodes.a stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodea.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodea_io.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_bandpre.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_bbdpre.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_diag.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_direct.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_io.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_ls.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_sim.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_stg.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_stg1.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_spils.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_context.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_direct.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_futils.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_iterative.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_linearsolver.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_math.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_matrix.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_memory.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nonlinearsolver.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector_senswrapper.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_version.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/band/sunmatrix_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/dense/sunmatrix_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/band/sunlinsol_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/dense/sunlinsol_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/newton/sunnonlinsol_newton.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o
ar: creating stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_cvodes.a
ar -rs stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_idas.a stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idaa.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idaa_io.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_bbdpre.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_direct.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_ic.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_io.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_ls.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls_sim.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls_stg.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_spils.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_context.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_direct.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_futils.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_iterative.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_linearsolver.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_math.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_matrix.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_memory.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nonlinearsolver.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector_senswrapper.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_version.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/band/sunmatrix_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/dense/sunmatrix_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/band/sunlinsol_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/dense/sunlinsol_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/newton/sunnonlinsol_newton.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o
ar: creating stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_idas.a
ar -rs stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_kinsol.a stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_bbdpre.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_direct.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_io.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_ls.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_spils.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_context.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_direct.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_futils.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_iterative.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_linearsolver.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_math.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_matrix.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_memory.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nonlinearsolver.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector_senswrapper.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_version.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/band/sunmatrix_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/dense/sunmatrix_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/band/sunlinsol_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/dense/sunlinsol_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/newton/sunnonlinsol_newton.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o
ar: creating stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_kinsol.a
tbb_root="../tbb_2020.3" CXX="g++" CC="gcc" LDFLAGS='-Wl,-L,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb"  ' 'mingw32-make.exe' -C "stan/lib/stan_math/lib/tbb" -r -f "C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb_2020.3/build/Makefile.tbbmalloc" compiler=gcc cfg=release stdver=c++1y malloc CXXFLAGS="-U__MSVCRT_VERSION__ -D__MSVCRT_VERSION__=0x0E00"
mingw32-make[1]: Entering directory 'C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb'
g++ -c -MMD -O2 -DUSE_WINTHREAD -D_WIN32_WINNT=0x0502 -DMINGW_HAS_SECURE_API=1 -D__MSVCRT_VERSION__=0x0700 -msse -mthreads -m64 -mrtm   -U__MSVCRT_VERSION__ -D__MSVCRT_VERSION__=0x0E00 -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-parentheses -Wno-uninitialized -Wno-non-virtual-dtor  -flifetime-dse=1 -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include -I../tbb_2020.3/src/tbbmalloc -I../tbb_2020.3/src/tbbmalloc ../tbb_2020.3/src/tbbmalloc/backend.cpp
g++ -c -MMD -O2 -DUSE_WINTHREAD -D_WIN32_WINNT=0x0502 -DMINGW_HAS_SECURE_API=1 -D__MSVCRT_VERSION__=0x0700 -msse -mthreads -m64 -mrtm   -U__MSVCRT_VERSION__ -D__MSVCRT_VERSION__=0x0E00 -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-parentheses -Wno-uninitialized -Wno-non-virtual-dtor  -flifetime-dse=1 -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include -I../tbb_2020.3/src/tbbmalloc -I../tbb_2020.3/src/tbbmalloc ../tbb_2020.3/src/tbbmalloc/large_objects.cpp
g++ -c -MMD -O2 -DUSE_WINTHREAD -D_WIN32_WINNT=0x0502 -DMINGW_HAS_SECURE_API=1 -D__MSVCRT_VERSION__=0x0700 -msse -mthreads -m64 -mrtm   -U__MSVCRT_VERSION__ -D__MSVCRT_VERSION__=0x0E00 -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-parentheses -Wno-uninitialized -Wno-non-virtual-dtor  -flifetime-dse=1 -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include -I../tbb_2020.3/src/tbbmalloc -I../tbb_2020.3/src/tbbmalloc ../tbb_2020.3/src/tbbmalloc/backref.cpp
g++ -Wno-nonnull -std=c++1y -m64 -D_REENTRANT -Wall -Wno-unused-function -Wno-uninitialized -Wno-unused-but-set-variable -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-attributes -Wno-ignored-attributes      -I stan/lib/stan_math/lib/tbb_2020.3/include    -O3 -I src -I stan/src -I lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials  -D_USE_MATH_DEFINES  -DBOOST_DISABLE_ASSERTS                -Wl,-L,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb"      bin/cmdstan/stansummary.o  -static-libgcc -static-libstdc++      -Wl,-L,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb"   -o bin/stansummary.exe
g++ -c -MMD -O2 -DUSE_WINTHREAD -D_WIN32_WINNT=0x0502 -DMINGW_HAS_SECURE_API=1 -D__MSVCRT_VERSION__=0x0700 -msse -mthreads -m64 -mrtm   -U__MSVCRT_VERSION__ -D__MSVCRT_VERSION__=0x0E00 -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-parentheses -Wno-uninitialized -Wno-non-virtual-dtor  -flifetime-dse=1 -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include -I../tbb_2020.3/src/tbbmalloc -I../tbb_2020.3/src/tbbmalloc ../tbb_2020.3/src/tbbmalloc/tbbmalloc.cpp
g++ -Wno-nonnull -std=c++1y -m64 -D_REENTRANT -Wall -Wno-unused-function -Wno-uninitialized -Wno-unused-but-set-variable -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-attributes -Wno-ignored-attributes      -I stan/lib/stan_math/lib/tbb_2020.3/include    -O3 -I src -I stan/src -I lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials  -D_USE_MATH_DEFINES  -DBOOST_DISABLE_ASSERTS                -Wl,-L,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb"      bin/cmdstan/print.o  -static-libgcc -static-libstdc++      -Wl,-L,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb"   -o bin/print.exe
g++ -c -MMD -O2 -DUSE_WINTHREAD -D_WIN32_WINNT=0x0502 -DMINGW_HAS_SECURE_API=1 -D__MSVCRT_VERSION__=0x0700 -msse -mthreads -m64 -mrtm   -U__MSVCRT_VERSION__ -D__MSVCRT_VERSION__=0x0E00 -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-parentheses -Wno-uninitialized -Wno-non-virtual-dtor  -flifetime-dse=1 -o itt_notify_malloc.o -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/itt_notify.cpp
g++ -Wno-nonnull -std=c++1y -m64 -D_REENTRANT -Wall -Wno-unused-function -Wno-uninitialized -Wno-unused-but-set-variable -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-attributes -Wno-ignored-attributes      -I stan/lib/stan_math/lib/tbb_2020.3/include    -O3 -I src -I stan/src -I lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials  -D_USE_MATH_DEFINES  -DBOOST_DISABLE_ASSERTS                -Wl,-L,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb"      bin/cmdstan/diagnose.o  -static-libgcc -static-libstdc++      -Wl,-L,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"C:/Users/danie/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb"   -o bin/diagnose.exe
cmd /C cscript /nologo /E:jscript ../tbb_2020.3/build/version_info_windows.js gcc intel64 "g++ -O2 -DUSE_WINTHREAD -D_WIN32_WINNT=0x0502 -DMINGW_HAS_SECURE_API=1 -D__MSVCRT_VERSION__=0x0700 -msse -mthreads -m64 -mrtm  -Wall -U__MSVCRT_VERSION__ -D__MSVCRT_VERSION__=0x0E00 -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1  -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include" > version_string.ver
g++ -E -x c++ ../tbb_2020.3/src/tbbmalloc/win64-gcc-tbbmalloc-export.def -O2 -DUSE_WINTHREAD -D_WIN32_WINNT=0x0502 -DMINGW_HAS_SECURE_API=1 -D__MSVCRT_VERSION__=0x0700 -msse -mthreads -m64 -mrtm  -Wall -U__MSVCRT_VERSION__ -D__MSVCRT_VERSION__=0x0E00 -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1  -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1  -Wno-parentheses -Wno-uninitialized -Wno-non-virtual-dtor -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include > tbbmalloc.def
g++ -c -MMD -O2 -DUSE_WINTHREAD -D_WIN32_WINNT=0x0502 -DMINGW_HAS_SECURE_API=1 -D__MSVCRT_VERSION__=0x0700 -msse -mthreads -m64 -mrtm  -Wall -U__MSVCRT_VERSION__ -D__MSVCRT_VERSION__=0x0E00 -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1  -Wno-parentheses -Wno-uninitialized -Wno-non-virtual-dtor  -flifetime-dse=1 -D__TBBMALLOC_BUILD=1 -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include -I../tbb_2020.3/src/tbbmalloc -I../tbb_2020.3/src/tbbmalloc ../tbb_2020.3/src/tbbmalloc/proxy.cpp
g++ -c -MMD -O2 -DUSE_WINTHREAD -D_WIN32_WINNT=0x0502 -DMINGW_HAS_SECURE_API=1 -D__MSVCRT_VERSION__=0x0700 -msse -mthreads -m64 -mrtm  -Wall -U__MSVCRT_VERSION__ -D__MSVCRT_VERSION__=0x0E00 -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1  -Wno-parentheses -Wno-uninitialized -Wno-non-virtual-dtor  -flifetime-dse=1 -D__TBBMALLOC_BUILD=1 -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include -I../tbb_2020.3/src/tbbmalloc -I../tbb_2020.3/src/tbbmalloc ../tbb_2020.3/src/tbbmalloc/tbb_function_replacement.cpp

Warning message:
There was a problem during installation. See the error message(s) above. 
> file <- file.path(cmdstan_path(), "examples", "bernoulli", "bernoulli.stan")
Error: CmdStan path has not been set yet. See ?set_cmdstan_path.
jgabry commented 6 months ago

Closing since I think this is resolved in later versions, but please reopen if still an issue