Open wpfl-dbt opened 1 year ago
I am experiencing a similar issue, but across mac, linux (ubuntu), and windows implementations. For me, the issue appears to be that a massive amount of memory is used during once sampling is initiated, which ultimately crashes R.
I tracked my issue back to a recent update for StanHeaders
. Re-installing the archived version StanHeaders_2.21.0-7.tar.gz seems to have fixed my memory issue.
@andrjohns see also https://discourse.mc-stan.org/t/rstan-segfaults-on-macos-ventura-13-4/31547
Until we have rstan 2.26 on CRAN if you update to StanHeaders 2.26 then you need to also reinstall rstan 2.21 from source
Until we have rstan 2.26 on CRAN if you update to StanHeaders 2.26 then you need to also reinstall rstan 2.21 from source
I use rstan_2.21.8 and StanHeaders_2.26.26, but still when I run "example(stan_model, package = "rstan", run.dontrun = TRUE)"
I get "R session aborted".
R version 4.3.0 (2023-04-21) Platform: aarch64-apple-darwin20 (64-bit) Running under: macOS Ventura 13.4
Until we have rstan 2.26 on CRAN if you update to StanHeaders 2.26 then you need to also reinstall rstan 2.21 from source
I use rstan_2.21.8 and StanHeaders_2.26.26, but still when I run "example(stan_model, package = "rstan", run.dontrun = TRUE)"
I get "R session aborted".
R version 4.3.0 (2023-04-21) Platform: aarch64-apple-darwin20 (64-bit) Running under: macOS Ventura 13.4
Finally this worked for me: https://discourse.mc-stan.org/t/installing-rstan/20743/2
I'm observing a similar issue specific to rstan=2.21.8
(which is the current version on CRAN): massively increasing memory usage during warmup/sampling, in the 100s of GB. 2.21.7
stays under 2 GB for my model.
Both are using StanHeaders=2.26.27
(also current CRAN). This is on vanilla R=4.3.1
on Gentoo.
Alternatively, using StanHeaders=2.21.0-7
, sampling works fine when using rstan=2.21.8
Until we have rstan 2.26 on CRAN if you update to StanHeaders 2.26 then you need to also reinstall rstan 2.21 from source
Ultimately, re-installing both StanHeaders=2.26.27
and rstan=2.21.8
(in this order) from source solved the issue for me.
I'm trying to install
rstan
to go through Statistical Rethinking, and when I try to verify the installation withexample(stan_model, package = "rstan", run.dontrun = TRUE)
, I get "R encountered a fatal error. The session was terminated". This occurs during the linestan_md> fit <- sampling(mod, data = list(y_mean = 0))
in the console.This happens whether I install from CRAN or from mc-stan.org. With the second, even though the site suggests I should get 2.26, the version of
rstan
that comes back frominstall.packages
is 2.21.8, the same as CRAN, so I don't know if that has something to do with it.I don't know if this is extraneous information, but I have a working installation of
CmdStan
andCmdStanR
, also required for the book. My hunch is there could be some conflict there.Here's my versions:
Intel macOS Ventura 13.3.1 RStudio 2023.03.1+446 R version 4.3.0 rstan 2.21.8 StanHeaders 2.26.25