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Stan development repository. The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.
https://mc-stan.org
BSD 3-Clause "New" or "Revised" License
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acknowledgments + citations #187

Closed bob-carpenter closed 10 years ago

bob-carpenter commented 11 years ago 
@article{SchroederetalPNAS2013, 
  author = {Kari B Schroeder and Richard McElreath and Daniel Nettle}, 
  Title = {Variants at serotonin transporter and {2A} receptor genes predict cooperative behavior differentially according to presence of punishment}, 
  Journal = {Proceedings of the National Academy of Sciences, USA},
  Year = {2013}, 
  Volume = {110}, 
  Number = {10}, 
  Pages = {3955-3960}
}

@article{HouseetalPNAS2013,
Author = {Bailey R House and Joan B Silk and Joseph Henrich and H Clark Barrett and Brooke Scelza and Adam Boyette and Barry Hewlett and Richard McElreath and Stephen Laurence},
Journal = {Proceedings of the National Academy of Sciences, USA},
Title = {The Ontogeny of Prosocial Behavior across Diverse Societies},
Year = {2013}
}

@article{McElreathKosterHumanNature2012, 
  author = {Richard McElreath and Jeremy Koster}, 
  Title = {Using Multilevel Models to Estimate Variation in Foraging Returns: Effects of Failure Rate, Harvest Size, Age, and Individual Heterogeneity}, 
  Journal = {Human Nature}, 
  Year = {in press}
}
bob-carpenter commented 10 years ago

We're too far behind on acknowledgements, so I'm just going to point the manual at GitHub and the mailing lists.

bob-carpenter commented 10 years ago 
@article{sipillaigelman2013,
  Author = {Yajuan Si and Natesh Pillai and Andrew Gelman},
  Journal = {Submitted to Journal of the American Statistical Association},
  Title = {Bayesian nonparametric weighted sampling inference},
  Year = {2013}
}
seanjtaylor commented 10 years ago

@inproceedings{taylor2013selection, title={Selection effects in online sharing: consequences for peer adoption.}, author={Taylor, Sean J and Bakshy, Eytan and Aral, Sinan}, booktitle={ACM Conference on Electronic Commerce}, pages={821--836}, year={2013} }

gfrmin commented 10 years ago

Stan used and cited in

@article{cowling2012preliminary, title={Preliminary inferences on the age-specific seriousness of human disease caused by avian influenza A (H7N9) infections in China, March to April 2013}, author={Cowling, BJ and Freeman, G and Wong, JY and Wu, P and Liao, Q and Lau, EH and Wu, JT and Fielding, R and Leung, GM}, journal={Euro surveillance: bulletin Europeen sur les maladies transmissibles= European communicable disease bulletin}, volume={18}, number={19}, year={2012} }

djsutherland commented 10 years ago 
@inproceedings{Sutherland:2013:ALS:2487575.2487627,
 author = {Sutherland, Dougal J. and P\'{o}czos, Barnab\'{a}s and Schneider, Jeff},
 title = {Active learning and search on low-rank matrices},
 booktitle = {Proceedings of the 19th ACM SIGKDD international conference on Knowledge discovery and data mining},
 series = {KDD '13},
 year = {2013},
 isbn = {978-1-4503-2174-7},
 location = {Chicago, Illinois, USA},
 pages = {212--220},
 numpages = {9},
 url = {http://doi.acm.org/10.1145/2487575.2487627},
 doi = {10.1145/2487575.2487627},
 acmid = {2487627},
 publisher = {ACM},
 address = {New York, NY, USA},
}
andrewgelman commented 10 years ago

D Does this mean that now we can write our Stan wikipedia article? A

On Oct 1, 2013, at 10:20 PM, Dougal Sutherland wrote:

Used and cited Stan in

@inproceedings{Sutherland:2013:ALS:2487575.2487627, author = {Sutherland, Dougal J. and P\'{o}czos, Barnab\'{a}s and Schneider, Jeff}, title = {Active learning and search on low-rank matrices}, booktitle = {Proceedings of the 19th ACM SIGKDD international conference on Knowledge discovery and data mining}, series = {KDD '13}, year = {2013}, isbn = {978-1-4503-2174-7}, location = {Chicago, Illinois, USA}, pages = {212--220}, numpages = {9}, url = {http://doi.acm.org/10.1145/2487575.2487627}, doi = {10.1145/2487575.2487627}, acmid = {2487627}, publisher = {ACM}, address = {New York, NY, USA}, } — Reply to this email directly or view it on GitHub.

syclik commented 10 years ago

Not by Wikipedia's standards. They want someone to write about Stan. Perhaps I can just remove the other references and use Ben's.

Here's the article for submission: https://en.wikipedia.org/wiki/Wikipedia_talk:Articles_for_creation/Stan_%28software%29

On Tue, Oct 1, 2013 at 4:26 PM, andrewgelman notifications@github.comwrote:

D Does this mean that now we can write our Stan wikipedia article? A

On Oct 1, 2013, at 10:20 PM, Dougal Sutherland wrote:

Used and cited Stan in

@inproceedings{Sutherland:2013:ALS:2487575.2487627, author = {Sutherland, Dougal J. and P\'{o}czos, Barnab\'{a}s and Schneider, Jeff}, title = {Active learning and search on low-rank matrices}, booktitle = {Proceedings of the 19th ACM SIGKDD international conference on Knowledge discovery and data mining}, series = {KDD '13}, year = {2013}, isbn = {978-1-4503-2174-7}, location = {Chicago, Illinois, USA}, pages = {212--220}, numpages = {9}, url = {http://doi.acm.org/10.1145/2487575.2487627}, doi = {10.1145/2487575.2487627}, acmid = {2487627}, publisher = {ACM}, address = {New York, NY, USA}, } — Reply to this email directly or view it on GitHub.

— Reply to this email directly or view it on GitHubhttps://github.com/stan-dev/stan/issues/187#issuecomment-25486227 .

bob-carpenter commented 10 years ago

Schmettow, M. and Havinga, J., 2013. Are users more diverse than designs? Testing and extending a 25 years old claim . In C. Bowers & B. Cowan, eds. Proceedings of BCS HCI 2013- The Internet of Things XXVII. Uxbridge, UK: BCS Learning and Development Ltd.

syclik commented 10 years ago

Here are a few more that I found through Google Scholar:

Used Stan for modeling:

@article{
year={2013},
issn={0921-8971},
journal={Journal of Applied Phycology},
doi={10.1007/s10811-013-0030-7},
title={The effect of light and temperature on the growth and photosynthesis of Gracilariopsis chorda (Gracilariales, Rhodophtya) from geographically separated locations of Japan},
url={http://dx.doi.org/10.1007/s10811-013-0030-7},
publisher={Springer Netherlands},
keywords={Gracilariaceae; Gracilariopsis chorda; Growth; Photosynthesis; Temperature},
author={Terada, Ryuta and Inoue, Shingo and Nishihara, GregoryN.},
pages={1-10},
language={English}
}

(url: http://stat.uns.ac.rs/masterThesis/NemanjaVaci_MasterRad.pdf)
 @MastersThesis{
    author     =     {Nemanja Vaci},
    title     =     {{PoreĎenje metoda ocenjivanja parametara
na podacima iz psiholingvističkih eksperimenata (Robustness of methods for estimating regression parameters: Case of psycholinguistics data.)}},
    school     =     {Univerzitet u Novom Sadu},
    address     =     {Srbija},
    year     =     {2013},
    }

Mentions Stan, but doesn't use it:


@article {PST:PST1595,
author = {Natanegara, Fanni and Neuenschwander, Beat and Seaman, John W. and Kinnersley, Nelson and Heilmann, Cory R. and Ohlssen, David and Rochester, George},
title = {The current state of Bayesian methods in medical product development: survey results and recommendations from the DIA Bayesian Scientific Working Group},
journal = {Pharmaceutical Statistics},
issn = {1539-1612},
url = {http://dx.doi.org/10.1002/pst.1595},
doi = {10.1002/pst.1595},
pages = {n/a--n/a},
keywords = {Bayesian, medical product development, survey, education},
year = {2013},
}

@ARTICLE{2013arXiv1306.0202K,
   author = {{Kronberger}, G.},
    title = "{Declarative Modeling and Bayesian Inference of Dark Matter Halos}",
  journal = {ArXiv e-prints},
archivePrefix = "arXiv",
   eprint = {1306.0202},
 primaryClass = "stat.ML",
 keywords = {Statistics - Machine Learning, Astrophysics - Instrumentation and Methods for Astrophysics},
     year = 2013,
    month = jun,
   adsurl = {http://adsabs.harvard.edu/abs/2013arXiv1306.0202K},
  adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{2013arXiv1306.3277M,
   author = {{Murray}, L.~M.},
    title = "{Bayesian State-Space Modelling on High-Performance Hardware Using LibBi}",
  journal = {ArXiv e-prints},
archivePrefix = "arXiv",
   eprint = {1306.3277},
 primaryClass = "stat.CO",
 keywords = {Statistics - Computation},
     year = 2013,
    month = jun,
   adsurl = {http://adsabs.harvard.edu/abs/2013arXiv1306.3277M},
  adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{2013arXiv1301.6064B,
   author = {{Byrne}, S. and {Girolami}, M.},
    title = "{Geodesic Monte Carlo on Embedded Manifolds}",
  journal = {ArXiv e-prints},
archivePrefix = "arXiv",
   eprint = {1301.6064},
 primaryClass = "stat.CO",
 keywords = {Statistics - Computation},
     year = 2013,
    month = jan,
   adsurl = {http://adsabs.harvard.edu/abs/2013arXiv1301.6064B},
  adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@article {MEE3:MEE312044,
author = {Bolker, Benjamin M. and Gardner, Beth and Maunder, Mark and Berg, Casper W. and Brooks, Mollie and Comita, Liza and Crone, Elizabeth and Cubaynes, Sarah and Davies, Trevor and de Valpine, Perry and Ford, Jessica and Gimenez, Olivier and Kéry, Marc and Kim, Eun Jung and Lennert-Cody, Cleridy and Magnusson, Arni and Martell, Steve and Nash, John and Nielsen, Anders and Regetz, Jim and Skaug, Hans and Zipkin, Elise},
title = {Strategies for fitting nonlinear ecological models in R, AD Model Builder, and BUGS},
journal = {Methods in Ecology and Evolution},
volume = {4},
number = {6},
issn = {2041-210X},
url = {http://dx.doi.org/10.1111/2041-210X.12044},
doi = {10.1111/2041-210X.12044},
pages = {501--512},
keywords = {JAGS, optimization, parameter estimation, R, AD Model Builder, WinBUGS},
year = {2013},
}

@ARTICLE{2012arXiv1210.7477N,
   author = {{Nishihara}, R. and {Murray}, I. and {Adams}, R.~P.},
    title = "{Parallel MCMC with Generalized Elliptical Slice Sampling}",
  journal = {ArXiv e-prints},
archivePrefix = "arXiv",
   eprint = {1210.7477},
 primaryClass = "stat.CO",
 keywords = {Statistics - Computation, Statistics - Machine Learning},
     year = 2012,
    month = oct,
   adsurl = {http://adsabs.harvard.edu/abs/2012arXiv1210.7477N},
  adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}