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standage / genhub

Explore eukaryotic genome composition and organization with iLoci
BSD 3-Clause "New" or "Revised" License
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Updated name to reflect new name on NCBI #92

Closed timlai4 closed 5 years ago

standage commented 5 years ago

It looks like I need to take back some words!

Not all of the GenBank assembly records are annotated. This is certainly the case for Amel 4.5. And the GenBank example I mentioned previously (Znev) is now available in RefSeq.

Looking around more closely, it looks like there is an all_assembly_versions/suppressed/ directory for each species in RefSeq whose reference genome has been recently replaced. I don't ever remember seeing this when I was first developing GenHub, but it might be our key to providing provenance for older assembly/annotation versions.

standage commented 5 years ago

Most of these changes were integrated into #94.