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stanfordmlgroup / chexpert-labeler

CheXpert NLP tool to extract observations from radiology reports.
MIT License
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Issue while installing #30

Closed ashwanikumar04 closed 3 years ago

ashwanikumar04 commented 3 years ago

Hello:

I am trying to install chexpert-labeler on Ubuntu machine however, when I run the step 5. I am getting following error

Traceback (most recent call last):
  File "test.py", line 1, in <module>
    from bllipparser import RerankingParser
  File "/home/ubuntu/.conda/envs/chexpert-label/lib/python3.6/site-packages/bllipparser/__init__.py", line 399, in <module>
    from .RerankingParser import RerankingParser, Tree, Sentence, tokenize
  File "/home/ubuntu/.conda/envs/chexpert-label/lib/python3.6/site-packages/bllipparser/RerankingParser.py", line 20, in <module>
    from . import JohnsonReranker as reranker
  File "/home/ubuntu/.conda/envs/chexpert-label/lib/python3.6/site-packages/bllipparser/JohnsonReranker.py", line 28, in <module>
    _JohnsonReranker = swig_import_helper()
  File "/home/ubuntu/.conda/envs/chexpert-label/lib/python3.6/site-packages/bllipparser/JohnsonReranker.py", line 24, in swig_import_helper
    _mod = imp.load_module('_JohnsonReranker', fp, pathname, description)
  File "/home/ubuntu/.conda/envs/chexpert-label/lib/python3.6/imp.py", line 243, in load_module
    return load_dynamic(name, filename, file)
  File "/home/ubuntu/.conda/envs/chexpert-label/lib/python3.6/imp.py", line 343, in load_dynamic
    return _load(spec)
ImportError: /home/ubuntu/.conda/envs/chexpert-label/lib/python3.6/site-packages/bllipparser/_JohnsonReranker.cpython-36m-x86_64-linux-gnu.so: undefined symbol: _ZNSt7__cxx1118basic_stringstreamIcSt11char_traitsIcESaIcEEC1Ev

I am not sure what is wrong here. Can anybody help me here?

Thanks

ashwanikumar04 commented 3 years ago

I was able to run the labeler on a clean machine